CSIRO_D5chr04_21930393 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCSIRO_D5chr04_21930393
AliasChr04_21930393
dbSNP IDN/A
TypeSNP
SNP AllelesG/C
5' Flanking SequenceAAAGTTTCTTCTTCGATTCTATTAGTCCCCAGTTTCTTGTTTGGCTTAATAATGTTCCTT TCGCAAAACCAATCAAACGGCGAGAAATTCCTTTTCTCCA
3' Flanking SequenceTTAAGCCGTTAAAAGTAGGGTTGATTAGATTGCCACGTTAGATCTTCGTGGTATCGATCC GAATTCTCTGTTTATTTAAACCCTCACCTTCAAATTCAAG
SpeciesGossypium hirsutum
GermplasmSiokra 1-4
MCU-5 (PI 694627)
Source Typerestriction-site associated DNA
RNA-seq and restriction-site associated DNA
Restriction EnzymeEcoRI; ApekI; SbfI
Publication[view all]
ContactZhu, Qian-Hao
Wilson, Iain
CommentData obtained 2014. SNP location is based on D5 JGI 221 position
Contact
NameDetails
Zhu, Qian-Hao
First name:Qian-Hao
Last name:Zhu
Title:Research Scientist
Institution:CSIRO
Address:CSIRO Plant Industry, GPO Box 1600, Canberra, ACT 2601,
Country:Australia
Email:Qianhao.Zhu@csiro.au
Phone:61 2 62464903
Last update:24-Aug-2014
Wilson, Iain
Description:SNPs; Disease resistance
First name:Iain
Last name:Wilson
Title:Senior Scientist
Institution:CSIRO
Address:Black Mountain Laboratories Clunies Ross Street, Black Mountain, ACT 2601
Country:Australia
Email:iain.wilson@csiro.au
Phone:+61 (0)2 62465211
Last update:28-Feb-2010
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D5_08chromosomeD5_08:22008324..22008524 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Dt_chr4chromosomeDt_chr4:15512018..15512218 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D08chromosomeD08:23222531..23222731 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D08chromosomeGhir_D08:23462714..23462914 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D08chromosomeD08:22949692..22949892 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D08chromosomeD08:22699502..22699702 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D08chromosomeD08:23155538..23155738 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
CM017630.1chromosomeCM017630.1:23315828..23316028 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017656.1chromosomeCM017656.1:25064470..25064670 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017708.1chromosomeCM017708.1:23398065..23398265 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D08chromosomeD08:23543427..23543627 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:22021737..22021937 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr04chromosomeChr04:22599066..22599266 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr04chromosomechr04:18112979..18113179 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr04chromosomeChr04:23723003..23723203 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr04chromosomeChr04:12967114..12967314 +Gossypium gossypioides (D6) genome ISU_v1n/a
Germplasm
Stock NameType
Siokra 1-4accession
MCU-5 (PI 694627)accession
Sequence
>CSIRO_D5chr04_21930393 ID=CSIRO_D5chr04_21930393; Name=CSIRO_D5chr04_21930393; organism=Gossypium hirsutum; type=genetic_marker; length=205bp
AAAGTTTCTTCTTCGATTCTATTAGTCCCCAGTTTCTTGTTTGGCTTAAT
AATGTTCCTTTCGCAAAACCAATCAAACGGCGAGAAATTCCTTTTCTCCA
[G/C]TTAAGCCGTTAAAAGTAGGGTTGATTAGATTGCCACGTTAGATCT
TCGTGGTATCGATCCGAATTCTCTGTTTATTTAAACCCTCACCTTCAAAT
TCAAG