CSIRO_D5chr01_34430414 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCSIRO_D5chr01_34430414
AliasChr01_34430414
dbSNP IDN/A
TypeSNP
SNP AllelesA/T
5' Flanking SequenceGTGGGAAATATTTTTTTTCATTTAATAAAGTTCCAAGAAATAGTAAACAAAATTTCAAAT CGATTTGAATTCGTTTACCCACTGAAATCAATATTTTTTT
3' Flanking SequenceAAAAAAAATAGGGTAAAGACAATTTTTAGAGGCTGTTCAAGCAAAATAGGCAAAAACACA GTATTTAGCATAATGAAACAACTCAAAAACACTCAAATTT
SpeciesGossypium hirsutum
GermplasmSiokra 1-4
MCU-5 (PI 694627)
Source Typerestriction-site associated DNA
RNA-seq and restriction-site associated DNA
Restriction EnzymeEcoRI; ApekI; SbfI
Publication[view all]
ContactZhu, Qian-Hao
Wilson, Iain
CommentData obtained 2014. SNP location is based on D5 JGI 221 position
Contact
NameDetails
Zhu, Qian-Hao
First name:Qian-Hao
Last name:Zhu
Title:Research Scientist
Institution:CSIRO
Address:CSIRO Plant Industry, GPO Box 1600, Canberra, ACT 2601,
Country:Australia
Email:Qianhao.Zhu@csiro.au
Phone:61 2 62464903
Last update:24-Aug-2014
Wilson, Iain
Description:SNPs; Disease resistance
First name:Iain
Last name:Wilson
Title:Senior Scientist
Institution:CSIRO
Address:Black Mountain Laboratories Clunies Ross Street, Black Mountain, ACT 2601
Country:Australia
Email:iain.wilson@csiro.au
Phone:+61 (0)2 62465211
Last update:28-Feb-2010
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D5_07chromosomeD5_07:34756203..34756402 +
Dt_chr1chromosomeDt_chr1:71000399..71000599 -
D07chromosomeD07:36748249..36748449 +
Ghir_D07chromosomeGhir_D07:37494058..37494258 +
D07chromosomeD07:37342650..37342850 +
D07chromosomeD07:37761130..37761330 +
D07chromosomeD07:36879112..36879312 +
D07chromosomeD07:38194501..38194701 +
Chr07chromosomeChr07:17503397..17503597 -
Chr01chromosomeChr01:37131229..37131429 +
Germplasm
Stock NameType
Siokra 1-4accession
MCU-5 (PI 694627)accession
Sequence
>CSIRO_D5chr01_34430414 ID=CSIRO_D5chr01_34430414; Name=CSIRO_D5chr01_34430414; organism=Gossypium hirsutum; type=genetic_marker; length=205bp
GTGGGAAATATTTTTTTTCATTTAATAAAGTTCCAAGAAATAGTAAACAA
AATTTCAAATCGATTTGAATTCGTTTACCCACTGAAATCAATATTTTTTT
[A/T]AAAAAAAATAGGGTAAAGACAATTTTTAGAGGCTGTTCAAGCAAA
ATAGGCAAAAACACAGTATTTAGCATAATGAAACAACTCAAAAACACTCA
AATTT