TAMU_Gb379_006493, TAMU_Gb379_006493 (genetic_marker) Gossypium barbadense

Marker Overview
NameTAMU_Gb379_006493
AliasGb379_006493
dbSNP IDN/A
TypeSNP
SNP AllelesA/G
5' Flanking SequenceGTGGGACCCTCACCCTCTCGCATGAGGGGCACATGGTAAGAGTAGTGGGT
3' Flanking SequenceGGTTCATTTGCATGTAAAACTGCGGGGAGAGTTTCAGTGCTCTCAGTTCC
SpeciesGossypium barbadense
Germplasm3-79
Source TypeRNA
Publication[view all]
ContactStelly, David M.
Commentclass_I: no additional polymorphism was found to exist in the same contig
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A11chromosomeA11:2401619..2401719 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018212.1chromosomeCM018212.1:2374193..2374293 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:122080209..122080309 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold2725_A11supercontigscaffold2725_A11:14982..15082 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A11chromosomeGhir_A11:2359362..2359462 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A11chromosomeA11:2286975..2287075 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:2237971..2238071 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:2388470..2388570 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A11chromosomeGbar_A11:1990450..1990550 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A11chromosomeA11:2390770..2390870 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017620.1chromosomeCM017620.1:2379993..2380093 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017646.1chromosomeCM017646.1:2430782..2430882 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017698.1chromosomeCM017698.1:2381562..2381662 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A11chromosomeA11:2400367..2400467 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:2444208..2444308 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:2358428..2358528 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_11chromosomeB_11:2421273..2421373 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr07chromosomeChr07:1627382..1627482 -Gossypium gossypioides (D6) genome ISU_v1n/a
E11chromosomeE11:2418336..2418436 -Gossypium stocksii (E1) genome NSF_v1n/a
F11chromosomeF11:2046803..2046903 -Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
3-79accession
Sequence
>TAMU_Gb379_006493 ID=TAMU_Gb379_006493; Name=TAMU_Gb379_006493; organism=Gossypium barbadense; type=genetic_marker; length=105bp
GTGGGACCCTCACCCTCTCGCATGAGGGGCACATGGTAAGAGTAGTGGGT
[A/G]GGTTCATTTGCATGTAAAACTGCGGGGAGAGTTTCAGTGCTCTCA
GTTCC