TAMU_Gb379_004609, TAMU_Gb379_004609 (genetic_marker) Gossypium barbadense

Marker Overview
NameTAMU_Gb379_004609
AliasGb379_004609
dbSNP IDN/A
TypeSNP
SNP AllelesA/T
5' Flanking SequenceACTTTTGCATACAAAATGCAGGGACCTTGCCAAGTGCAATCAACTTATAG
3' Flanking SequenceAACATCATAAACACACTGGTTTAAACCATTAAAAAGGCAGGAGATTGTCA
SpeciesGossypium barbadense
Germplasm3-79
Source TypeRNA
Publication[view all]
ContactStelly, David M.
Commentclass_I: no additional polymorphism was found to exist in the same contig
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A07chromosomeA07:90153452..90153552 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018208.1chromosomeCM018208.1:90133420..90133520 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:93603595..93603695 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr7chromosomeAt_chr7:31488881..31488981 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold1615_A07supercontigscaffold1615_A07:7824..7924 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A07chromosomeGhir_A07:94011501..94011601 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A07chromosomeA07:92989890..92989990 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A07chromosomeA07:92977360..92977460 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A07chromosomeA07:89507620..89507720 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A07chromosomeGbar_A07:89237541..89237641 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A07chromosomeA07:91435341..91435441 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017616.1chromosomeCM017616.1:93149977..93150077 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017642.1chromosomeCM017642.1:96017218..96017318 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017694.1chromosomeCM017694.1:91419606..91419706 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A07chromosomeA07:95109658..95109758 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:96867780..96867880 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr07chromosomeChr07:98258890..98258990 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_07chromosomeB_07:79088231..79088331 -Gossypium anomalum (B1) genome NSF_v1n/a
F07chromosomeF07:79025831..79025931 -Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
3-79accession
Sequence
>TAMU_Gb379_004609 ID=TAMU_Gb379_004609; Name=TAMU_Gb379_004609; organism=Gossypium barbadense; type=genetic_marker; length=105bp
ACTTTTGCATACAAAATGCAGGGACCTTGCCAAGTGCAATCAACTTATAG
[A/T]AACATCATAAACACACTGGTTTAAACCATTAAAAAGGCAGGAGAT
TGTCA