TAMU_Gb379_003967, TAMU_Gb379_003967 (genetic_marker) Gossypium barbadense

Marker Overview
NameTAMU_Gb379_003967
AliasGb379_003967
dbSNP IDN/A
TypeSNP
SNP AllelesA/G
5' Flanking SequenceGGGAAACGGCTTTAGCCTTTGACTTGCCTCGGCCTCCTTTGGTGGTTGTT
3' Flanking SequenceCTGCCGCGGAGCTCATGATTTGCAGATTTGTTTGGATTTCTTTTCCTTTT
SpeciesGossypium barbadense
Germplasm3-79
Source TypeRNA
Publication[view all]
ContactStelly, David M.
Commentclass_I: no additional polymorphism was found to exist in the same contig
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D08chromosomeD08:11707049..11707149 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A08chromosomeA08:13630799..13630899 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018222.1chromosomeCM018222.1:11121956..11122056 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018209.1chromosomeCM018209.1:13127861..13127961 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_08chromosomeD5_08:10708636..10708736 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:14775104..14775204 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_08chromosomeD10_08:51488280..51488380 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016621.1chromosomeCM016621.1:125312372..125312472 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr4chromosomeDt_chr4:20899073..20899173 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr4chromosomeAt_chr4:90413162..90413262 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D08chromosomeD08:11092841..11092941 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A08chromosomeA08:12857254..12857354 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D08chromosomeGhir_D08:11123048..11123148 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A08chromosomeGhir_A08:13449858..13449958 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D08chromosomeD08:10721732..10721832 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A08chromosomeA08:13169665..13169765 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D08chromosomeD08:10568526..10568626 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D08chromosomeD08:11206955..11207055 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A08chromosomeA08:13355755..13355855 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D08chromosomeGbar_D08:11250969..11251069 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A08chromosomeGbar_A08:13526549..13526649 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D08chromosomeD08:11320688..11320788 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A08chromosomeA08:13195341..13195441 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017630.1chromosomeCM017630.1:11331366..11331466 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017617.1chromosomeCM017617.1:13621111..13621211 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017656.1chromosomeCM017656.1:11723654..11723754 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017643.1chromosomeCM017643.1:14101294..14101394 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017708.1chromosomeCM017708.1:11171111..11171211 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017695.1chromosomeCM017695.1:13379882..13379982 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D08chromosomeD08:11279728..11279828 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A08chromosomeA08:14032407..14032507 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:14828704..14828804 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr08chromosomeChr08:10542846..10542946 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_08chromosomeB_08:14939837..14939935 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr04chromosomeChr04:11138224..11138324 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr04chromosomechr04:9467368..9467468 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_04chromosomeChr_04:8689507..8689607 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr04chromosomeChr04:10910169..10910269 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr04chromosomeChr04:8572393..8572492 -Gossypium aridum (D4) genome ISU_v1n/a
Unplaced_3423864chromosomeUnplaced_3423864:8759..8859 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr04chromosomeChr04:8479641..8479740 -Gossypium lobatum (D7) genome ISU_v1n/a
E08chromosomeE08:18396499..18396599 -Gossypium stocksii (E1) genome NSF_v1n/a
F08chromosomeF08:12189801..12189901 -Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
3-79accession
Sequence
>TAMU_Gb379_003967 ID=TAMU_Gb379_003967; Name=TAMU_Gb379_003967; organism=Gossypium barbadense; type=genetic_marker; length=105bp
GGGAAACGGCTTTAGCCTTTGACTTGCCTCGGCCTCCTTTGGTGGTTGTT
[A/G]CTGCCGCGGAGCTCATGATTTGCAGATTTGTTTGGATTTCTTTTC
CTTTT