USDA_CFB3871, USDA_CFB3871 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUSDA_CFB3871
AliasCFB3871
dbSNP IDN/A
TypeSNP
SNP AllelesG/A
5' Flanking SequenceTGCCTGAATTTCTTTTGGGGATGATGGGGTTACTCTCA
3' Flanking SequenceTACTCTTACCATTCAATTTCTGATGCAAATGAACATTCCCCATGTATGC
SpeciesGossypium hirsutum
Publication[view all]
ContactFang, David D.
CommentSNP generated in Data2Bio, LLC, Ames, IA
Contact
NameDetails
Fang, David D.
Description:Molecular markers, fiber development
First name:David
Last name:Fang
Title:Supervisory Research Geneticist
Institution:USDA-ARS-SRRC-CFBRU
Address:1100 Robert E. Lee Blvd, New Orleans, LA 70124
Country:United States
Email:david.fang@usda.gov
Phone:504 286 4527
Fax:001662686-5218
Keywords:Structural Genomics
Last update:2-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018219.1chromosomeCM018219.1:45543840..45543927 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:41721943..41722030 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_05chromosomeD10_05:17251422..17251509 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr9chromosomeDt_chr9:9085737..9085824 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:44636785..44636872 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:45519151..45519238 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:46651053..46651140 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:47576983..47577070 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:46072190..46072277 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D05chromosomeGbar_D05:46788052..46788139 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:47389750..47389837 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:46557331..46557418 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:47582530..47582617 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:46624625..46624712 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:48307183..48307270 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:42208407..42208494 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_05chromosomeB_05:20274080..20274167 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr09chromosomeChr09:42679744..42679831 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr09chromosomechr09:35060541..35060627 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_09chromosomeChr_09:33785172..33785259 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr09chromosomeChr09:45568179..45568266 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomeChr09:31551252..31551339 +Gossypium aridum (D4) genome ISU_v1n/a
Chr09chromosomeChr09:27658702..27658789 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr09chromosomeChr09:32441640..32441727 +Gossypium lobatum (D7) genome ISU_v1n/a
F05chromosomeF05:59395584..59395671 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr05chromosomeChr05:40291320..40291407 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr09chromosomeChr09:41792399..41792400 .Gossypium raimondii (D5) genome JGI_v2_a2.1Islam MS, Thyssen GN, Jenkins JN, and Fang DD. Detection, Validation, and Application of Genotyping-by-Sequencing Based Single Nucleotide Polymorphisms in Upland Cotton. The Plant Genome. 2015 March; 8(1):1-10.
Sequence
>USDA_CFB3871 ID=USDA_CFB3871; Name=USDA_CFB3871; organism=Gossypium hirsutum; type=genetic_marker; length=92bp
TGCCTGAATTTCTTTTGGGGATGATGGGGTTACTCTCA[A/G]TACTCTT
ACCATTCAATTTCTGATGCAAATGAACATTCCCCATGTATGC