USDA_CFB3862, USDA_CFB3862 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUSDA_CFB3862
AliasCFB3862
dbSNP IDN/A
TypeSNP
SNP AllelesA/T
5' Flanking SequenceCATATCCTACACTCAAACAAATTTGCAATGGTTTACACTAGAAGAAATCAAAGTTTGCAT ATTAATTAAAT
3' Flanking SequenceGGGGTTTGCATATTTT
SpeciesGossypium hirsutum
Publication[view all]
ContactFang, David D.
CommentSNP generated in Data2Bio, LLC, Ames, IA
Contact
NameDetails
Fang, David D.
Description:Molecular markers, fiber development
First name:David
Last name:Fang
Title:Supervisory Research Geneticist
Institution:USDA-ARS-SRRC-CFBRU
Address:1100 Robert E. Lee Blvd, New Orleans, LA 70124
Country:United States
Email:david.fang@usda.gov
Phone:504 286 4527
Fax:001662686-5218
Keywords:Structural Genomics
Last update:2-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018219.1chromosomeCM018219.1:50710215..50710302 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Dt_chr9chromosomeDt_chr9:17901821..17901908 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:50240039..50240126 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:51250931..51251018 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:52369784..52369871 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:53028288..53028375 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:51686580..51686667 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D05chromosomeGbar_D05:41487895..41487982 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:53149699..53149786 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:51950113..51950200 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:53311913..53312000 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:52272423..52272510 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:53917603..53917690 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:47345146..47345233 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr09chromosomeChr09:50484349..50484436 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomeChr09:34320247..34320334 -Gossypium aridum (D4) genome ISU_v1n/a
Chr09chromosomeChr09:46977296..46977297 .Gossypium raimondii (D5) genome JGI_v2_a2.1Islam MS, Thyssen GN, Jenkins JN, and Fang DD. Detection, Validation, and Application of Genotyping-by-Sequencing Based Single Nucleotide Polymorphisms in Upland Cotton. The Plant Genome. 2015 March; 8(1):1-10.
Sequence
>USDA_CFB3862 ID=USDA_CFB3862; Name=USDA_CFB3862; organism=Gossypium hirsutum; type=genetic_marker; length=92bp
CATATCCTACACTCAAACAAATTTGCAATGGTTTACACTAGAAGAAATCA
AAGTTTGCATATTAATTAAAT[A/T]GGGGTTTGCATATTTT