USDA_CFB3711, USDA_CFB3711 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUSDA_CFB3711
AliasCFB3711
dbSNP IDN/A
TypeSNP
SNP AllelesA/G
5' Flanking SequenceCTCCGGTTATCCAAAATCTACAGAACATAATAATAGCA
3' Flanking SequenceTAAGTATTTACAATACTTAGTAAGCTCATACAATTCAATTCAATAACTT
SpeciesGossypium hirsutum
Publication[view all]
ContactFang, David D.
CommentSNP generated in Data2Bio, LLC, Ames, IA
Contact
NameDetails
Fang, David D.
Description:Molecular markers, fiber development
First name:David
Last name:Fang
Title:Supervisory Research Geneticist
Institution:USDA-ARS-SRRC-CFBRU
Address:1100 Robert E. Lee Blvd, New Orleans, LA 70124
Country:United States
Email:david.fang@usda.gov
Phone:504 286 4527
Fax:001662686-5218
Keywords:Structural Genomics
Last update:2-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018219.1chromosomeCM018219.1:46907892..46907979 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:43015752..43015839 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_05chromosomeD10_05:15897108..15897195 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr9chromosomeDt_chr9:21878463..21878550 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:46042515..46042602 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:46971057..46971144 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:48068696..48068783 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:48992740..48992827 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:47485609..47485696 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D05chromosomeGbar_D05:45433312..45433399 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:48762433..48762520 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:47842182..47842269 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:49052823..49052910 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:47985254..47985341 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:49766237..49766324 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:43505478..43505565 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_05chromosomeB_05:22281112..22281198 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr09chromosomeChr09:43832193..43832280 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr09chromosomechr09:35928152..35928239 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_09chromosomeChr_09:34833468..34833555 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr09chromosomeChr09:46880353..46880440 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomeChr09:32337445..32337532 +Gossypium aridum (D4) genome ISU_v1n/a
Chr09chromosomeChr09:33316824..33316911 +Gossypium lobatum (D7) genome ISU_v1n/a
Chr09chromosomeChr09:43086361..43086362 .Gossypium raimondii (D5) genome JGI_v2_a2.1Islam MS, Thyssen GN, Jenkins JN, and Fang DD. Detection, Validation, and Application of Genotyping-by-Sequencing Based Single Nucleotide Polymorphisms in Upland Cotton. The Plant Genome. 2015 March; 8(1):1-10.
Sequence
>USDA_CFB3711 ID=USDA_CFB3711; Name=USDA_CFB3711; organism=Gossypium hirsutum; type=genetic_marker; length=92bp
CTCCGGTTATCCAAAATCTACAGAACATAATAATAGCA[A/G]TAAGTAT
TTACAATACTTAGTAAGCTCATACAATTCAATTCAATAACTT