USDA_CFB3264, USDA_CFB3264 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUSDA_CFB3264
AliasCFB3264
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i22664Gh
TypeSNP
SNP AllelesG/T
5' Flanking SequenceTCATAAAATATAAGAATAAGGGATGAAGTTTAATTTCCAATCTTTAGGGCAAAAGTGTAA ATATGTAAAA
3' Flanking SequenceTTTAGGGGCAAAATCAT
SpeciesGossypium hirsutum
Publication[view all]
ContactFang, David D.
Stelly, David M.
CommentSNP generated in Data2Bio, LLC, Ames, IA
Contact
NameDetails
Fang, David D.
Description:Molecular markers, fiber development
First name:David
Last name:Fang
Title:Supervisory Research Geneticist
Institution:USDA-ARS-SRRC-CFBRU
Address:1100 Robert E. Lee Blvd, New Orleans, LA 70124
Country:United States
Email:david.fang@usda.gov
Phone:504 286 4527
Fax:001662686-5218
Keywords:Structural Genomics
Last update:2-Jul-2009
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr09chromosomeChr09:41772596..41772596 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
CM018219.1chromosomeCM018219.1:45524044..45524131 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:41702129..41702215 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Dt_chr9chromosomeDt_chr9:9107470..9107557 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:44617000..44617087 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:45499395..45499482 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:46633426..46633513 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:47557198..47557285 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:46052405..46052492 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D05chromosomeGbar_D05:46807839..46807926 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:47370130..47370217 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:46537589..46537676 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:47571503..47571590 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:46604834..46604921 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:48287400..48287487 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:42188646..42188733 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Sequence
>USDA_CFB3264 ID=USDA_CFB3264; Name=USDA_CFB3264; organism=Gossypium hirsutum; type=genetic_marker; length=92bp
TCATAAAATATAAGAATAAGGGATGAAGTTTAATTTCCAATCTTTAGGGC
AAAAGTGTAAATATGTAAAA[G/T]TTTAGGGGCAAAATCAT