USDA_CFB2938, USDA_CFB2938 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUSDA_CFB2938
AliasCFB2938
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i21404Gh
TypeSNP
SNP AllelesA/C
5' Flanking SequenceCAGAGCTATTTGACTTACTAGGAGGTGAGACGTCCACTAGTTAACTCAAAAGCCTTAGCT TCATCTTA
3' Flanking SequenceTGAGGAAGAAGAGAACAT
SpeciesGossypium hirsutum
Publication[view all]
ContactFang, David D.
Stelly, David M.
CommentSNP generated in Data2Bio, LLC, Ames, IA
Contact
NameDetails
Fang, David D.
Description:Molecular markers, fiber development
First name:David
Last name:Fang
Title:Supervisory Research Geneticist
Institution:USDA-ARS-SRRC-CFBRU
Address:1100 Robert E. Lee Blvd, New Orleans, LA 70124
Country:United States
Email:david.fang@usda.gov
Phone:504 286 4527
Fax:001662686-5218
Keywords:Structural Genomics
Last update:2-Jul-2009
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr09chromosomeChr09:40541492..40541492 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
CM018219.1chromosomeCM018219.1:44247642..44247728 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:40451788..40451874 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
scaffold2409.1supercontigscaffold2409.1:159846..159932 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:43317437..43317523 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:44317355..44317441 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:45382404..45382490 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:46275556..46275642 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:44759467..44759553 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D05chromosomeGbar_D05:48073795..48073881 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:46167375..46167461 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:45343243..45343329 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:46243326..46243412 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:45369595..45369681 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:47005540..47005626 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:40939025..40939111 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr09chromosomeChr09:41454739..41454825 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr09chromosomeChr09:26965711..26965797 +Gossypium gossypioides (D6) genome ISU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
13-79 x TM-1, F2 (2015 SNP)AD_ch19_Dt.05N/A81.86i21404GhView
Sequence
>USDA_CFB2938 ID=USDA_CFB2938; Name=USDA_CFB2938; organism=Gossypium hirsutum; type=genetic_marker; length=91bp
CAGAGCTATTTGACTTACTAGGAGGTGAGACGTCCACTAGTTAACTCAAA
AGCCTTAGCTTCATCTTA[A/C]TGAGGAAGAAGAGAACAT