USDA_CFB2786, USDA_CFB2786 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUSDA_CFB2786
AliasCFB2786
dbSNP IDN/A
TypeSNP
SNP AllelesA/G
5' Flanking SequenceTCCTTAGTCAAATCGGAAATGAACAAATCGATTGAGAG
3' Flanking SequenceCTAATATGTCGTCTATCAAGTCCAACTGGAGAGATGTTCTGTTTTGGGC
SpeciesGossypium hirsutum
Publication[view all]
ContactFang, David D.
CommentSNP generated in Data2Bio, LLC, Ames, IA
Contact
NameDetails
Fang, David D.
Description:Molecular markers, fiber development
First name:David
Last name:Fang
Title:Supervisory Research Geneticist
Institution:USDA-ARS-SRRC-CFBRU
Address:1100 Robert E. Lee Blvd, New Orleans, LA 70124
Country:United States
Email:david.fang@usda.gov
Phone:504 286 4527
Fax:001662686-5218
Keywords:Structural Genomics
Last update:2-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018219.1chromosomeCM018219.1:47353907..47353994 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:43465056..43465143 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Dt_chr9chromosomeDt_chr9:22379125..22379212 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:46751186..46751273 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:47710424..47710511 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:48792667..48792754 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:49472153..49472240 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:48226027..48226114 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D05chromosomeGbar_D05:44905431..44905518 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:49662477..49662564 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:48602129..48602216 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:49732016..49732103 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:48891951..48892038 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:50239232..50239319 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:44232064..44232151 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr09chromosomeChr09:44457610..44457697 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr09chromosomeChr09:47504515..47504602 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomeChr09:43817376..43817377 .Gossypium raimondii (D5) genome JGI_v2_a2.1Islam MS, Thyssen GN, Jenkins JN, and Fang DD. Detection, Validation, and Application of Genotyping-by-Sequencing Based Single Nucleotide Polymorphisms in Upland Cotton. The Plant Genome. 2015 March; 8(1):1-10.
Sequence
>USDA_CFB2786 ID=USDA_CFB2786; Name=USDA_CFB2786; organism=Gossypium hirsutum; type=genetic_marker; length=92bp
TCCTTAGTCAAATCGGAAATGAACAAATCGATTGAGAG[A/G]CTAATAT
GTCGTCTATCAAGTCCAACTGGAGAGATGTTCTGTTTTGGGC