USDA_CFB0176, USDA_CFB0176 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUSDA_CFB0176
AliasCFB0176
dbSNP IDN/A
TypeSNP
SNP AllelesG/C
5' Flanking SequenceTGCAGCTGCTTCATGGCTGCCACTGTATCA
3' Flanking SequenceTTGACGAAGATTAAACCAGCATACTGCCATTGGTCCTCTCAAAACTTACCAAATCCAAGG
SpeciesGossypium hirsutum
Publication[view all]
ContactFang, David D.
CommentSNP generated in Data2Bio, LLC, Ames, IA
Contact
NameDetails
Fang, David D.
Description:Molecular markers, fiber development
First name:David
Last name:Fang
Title:Supervisory Research Geneticist
Institution:USDA-ARS-SRRC-CFBRU
Address:1100 Robert E. Lee Blvd, New Orleans, LA 70124
Country:United States
Email:david.fang@usda.gov
Phone:504 286 4527
Fax:001662686-5218
Keywords:Structural Genomics
Last update:2-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018215.1chromosomeCM018215.1:57408508..57408598 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_01chromosomeD5_01:51870072..51870162 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_01chromosomeKI_01:34599802..34599891 -Gossypioides kirkii genome ISU_v3n/a
D10_01chromosomeD10_01:4663885..4663975 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016614.1chromosomeCM016614.1:130245738..130245828 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr2chromosomeDt_chr2:9655308..9655398 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D01chromosomeD01:56023493..56023583 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D01chromosomeGhir_D01:57668029..57668119 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D01chromosomeD01:59292869..59292959 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D01chromosomeD01:59080832..59080922 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D01chromosomeD01:56316809..56316899 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D01chromosomeGbar_D01:57631193..57631283 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D01chromosomeD01:58257033..58257123 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017623.1chromosomeCM017623.1:58417414..58417504 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017649.1chromosomeCM017649.1:60554319..60554409 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017701.1chromosomeCM017701.1:58603079..58603169 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D01chromosomeD01:59564824..59564914 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:47679837..47679927 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr02chromosomeChr02:56468248..56468338 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr02chromosomechr02:43085153..43085243 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_02chromosomeChr_02:38384188..38384278 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr02chromosomeChr02:57286090..57286180 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr02chromosomeChr02:41556949..41557039 -Gossypium aridum (D4) genome ISU_v1n/a
Chr02chromosomeChr02:32893318..32893408 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr02chromosomeChr02:40088138..40088228 -Gossypium lobatum (D7) genome ISU_v1n/a
F01chromosomeF01:93536712..93536802 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr01chromosomeChr01:7975279..7975369 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr02chromosomeChr02:58052558..58052559 .Gossypium raimondii (D5) genome JGI_v2_a2.1Islam MS, Thyssen GN, Jenkins JN, and Fang DD. Detection, Validation, and Application of Genotyping-by-Sequencing Based Single Nucleotide Polymorphisms in Upland Cotton. The Plant Genome. 2015 March; 8(1):1-10.
Sequence
>USDA_CFB0176 ID=USDA_CFB0176; Name=USDA_CFB0176; organism=Gossypium hirsutum; type=genetic_marker; length=95bp
TGCAGCTGCTTCATGGCTGCCACTGTATCA[C/G]TTGACGAAGATTAAA
CCAGCATACTGCCATTGGTCCTCTCAAAACTTACCAAATCCAAGG