USDA_CFB0164, USDA_CFB0164 (genetic_marker) Gossypium hirsutum

Marker Overview


Name	USDA_CFB0164
Alias	CFB0164
dbSNP ID	N/A
Type	SNP
SNP Alleles	C/T
5' Flanking Sequence	TTCAGCACCCCTGCCGAGTGCCCCATGTCCACGTCTATTACCATTGCCATCCCCACCTTG CCCACGG
3' Flanking Sequence	CTCTCTGTAGTGGTGGCCT
Species	Gossypium hirsutum
Publication	[view all]
Contact	Fang, David D.
Comment	SNP generated in Data2Bio, LLC, Ames, IA

Contact

Name

Details

Fang, David D.

Description:	Molecular markers, fiber development
First name:	David
Last name:	Fang
Title:	Supervisory Research Geneticist
Institution:	USDA-ARS-SRRC-CFBRU
Address:	1100 Robert E. Lee Blvd, New Orleans, LA 70124
Country:	United States
Email:	david.fang@usda.gov
Phone:	504 286 4527
Fax:	001662686-5218
Keywords:	Structural Genomics
Last update:	2-Jul-2009

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
CM018213.1	chromosome	CM018213.1:81829868..81829954 -	Gossypium barbadense (AD2) '3-79' genome HGS_v1.1	n/a
scaffold258.1	supercontig	scaffold258.1:1227796..1227882 -	Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1	n/a
A12	chromosome	A12:71084881..71084967 -	Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1	n/a
Ghir_A12	chromosome	Ghir_A12:89407927..89408013 -	Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1	n/a
A12	chromosome	A12:90225717..90225803 -	Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1	n/a
A12	chromosome	A12:87506021..87506107 -	Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1	n/a
A12	chromosome	A12:84653874..84653960 -	Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1	n/a
Gbar_A12	chromosome	Gbar_A12:84310007..84310093 -	Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1	n/a
A12	chromosome	A12:83796638..83796724 -	Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1	n/a
CM017621.1	chromosome	CM017621.1:85072002..85072088 -	Gossypium tomentosum (AD3) genome HGS_v1.1	n/a
CM017699.1	chromosome	CM017699.1:84277076..84277162 -	Gossypium darwinii (AD5) genome HGS_v1.1	n/a
A12	chromosome	A12:90876134..90876220 -	Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1	n/a

Publications


Year	Publication
2015	Islam MS, Thyssen GN, Jenkins JN, and Fang DD. Detection, Validation, and Application of Genotyping-by-Sequencing Based Single Nucleotide Polymorphisms in Upland Cotton. The Plant Genome. 2015 March; 8(1):1-10.

Sequence

>USDA_CFB0164 ID=USDA_CFB0164; Name=USDA_CFB0164; organism=Gossypium hirsutum; type=genetic_marker; length=91bp
TTCAGCACCCCTGCCGAGTGCCCCATGTCCACGTCTATTACCATTGCCAT
CCCCACCTTGCCCACGG[C/T]CTCTCTGTAGTGGTGGCCT

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USDA_CFB0164, USDA_CFB0164 (genetic_marker) Gossypium hirsutum