STV0190, STV0190 (genetic_marker) Gossypium hirsutum

Marker Overview
NameSTV0190
AliasSTV190
STV_Contig_9622a
Genbank IDDN802410
TypeSSR
SpeciesGossypium hirsutum
GermplasmCoker 312
Source SequenceSTV_Contig_9622
Source TypeEST
Repeat MotifCCT
Primer 1STV190_F: GTTGAAGAAGCAGAGACCGTGAAT
Primer 2STV190_R: CCTACAGATATGGGAGCCAACAAA
PolymorphismP_ STV0190
Publication[view all]
ContactScheffler, Jodi A.
CommentPrimer data obtained in 2006
Contact
NameDetails
Scheffler, Jodi A.
First name:Jodi
Last name:Scheffler
Title:Research Geneticist
Institution:USDA-ARS
Address:141 Experiment Station Road, Stoneville, Mississippi 38776
Country:United States
Email:jodi.Scheffler@usda.gov
Phone:+001 662 686-5219
Keywords:Cotton Geneticist
Last update:20-Feb-2007
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDN802410
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D05chromosomeD05:5414399..5414607 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A05chromosomeA05:5958735..5958943 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018219.1chromosomeCM018219.1:4933765..4933973 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018206.1chromosomeCM018206.1:5834017..5834225 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:4732036..4732244 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_05chromosomeKI_05:4358759..4358967 +Gossypioides kirkii genome ISU_v3n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:5887796..5888004 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_05chromosomeD10_05:55747878..55748086 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016626.1chromosomeCM016626.1:8557686..8557894 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold1988.1supercontigscaffold1988.1:35446..35654 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr9chromosomeDt_chr9:64231801..64232009 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:5134893..5135101 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A05chromosomeA05:5553499..5553707 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:5278848..5279056 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A05chromosomeGhir_A05:5950260..5950468 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:5061216..5061424 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:5783914..5784122 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:5190693..5190901 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:5930139..5930347 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:5083503..5083711 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A05chromosomeA05:6338613..6338821 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At05chromosomeAt05:3735700..3735908 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold25887supercontigscaffold25887:4546..4754 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold91supercontigscaffold91:219905..220113 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D05chromosomeGbar_D05:5144636..5144844 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A05chromosomeGbar_A05:5581247..5581455 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:5250914..5251122 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A05chromosomeA05:6069531..6069739 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:5103349..5103557 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017614.1chromosomeCM017614.1:5953339..5953547 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:5422498..5422706 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017640.1chromosomeCM017640.1:5960055..5960263 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:5138072..5138280 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017692.1chromosomeCM017692.1:5843137..5843345 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:5225123..5225331 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A05chromosomeA05:6079894..6080101 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A05chromosomeA05:6061664..6061872 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:6252895..6253103 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:5762466..5762674 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr05chromosomeChr05:4763858..4764066 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_05chromosomeB_05:80417005..80417213 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr09chromosomeChr09:4887196..4887404 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr09chromosomechr09:4581602..4581810 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_09chromosomeChr_09:4944272..4944480 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr09chromosomeChr09:5072969..5073177 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomeChr09:4607423..4607631 +Gossypium aridum (D4) genome ISU_v1n/a
Chr09chromosomeChr09:3827211..3827419 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr09chromosomeChr09:4507371..4507579 +Gossypium lobatum (D7) genome ISU_v1n/a
E05chromosomeE05:6224503..6224711 +Gossypium stocksii (E1) genome NSF_v1n/a
F05chromosomeF05:4965579..4965787 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr13chromosomeChr13:192203339..192203547 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Coker 312accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
STV_Contig_9622STV_Contig_9622Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1JLZM x ZJXSLS, F2 (2008)A_JZ_A03N/A26.6STV190View
Sequence
>STV0190 ID=STV0190; Name=STV0190; organism=Gossypium hirsutum; type=genetic_marker; length=96bp
GTTGAAGAAGCAGAGACCGTGAATGTACCTCCTCCTCCTTCTGAGAAGCT
GCTTGTGTTGGGTGGAAATGGATTTGTTGGCTCCCATATCTGTAGG