STV0070, STV0070 (genetic_marker) Gossypium hirsutum

Marker Overview
NameSTV0070
AliasSTV070
STV_Contig_2679a
Genbank IDDT050582
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Source SequenceSTV_Contig_2679
Source TypeEST
Repeat MotifATT
Primer 1STV070_F: ACAAATCCACATTCAATATTCCTATCA
Primer 2STV070_R: TAGCCGTTCTAGACTTGGAATTGA
PolymorphismP_ STV0070
Publication[view all]
ContactScheffler, Jodi A.
CommentPrimer data obtained in 2006
Contact
NameDetails
Scheffler, Jodi A.
First name:Jodi
Last name:Scheffler
Title:Research Geneticist
Institution:USDA-ARS
Address:141 Experiment Station Road, Stoneville, Mississippi 38776
Country:United States
Email:jodi.Scheffler@usda.gov
Phone:+001 662 686-5219
Keywords:Cotton Geneticist
Last update:20-Feb-2007
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT050582
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D13chromosomeD13:64228454..64228611 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018227.1chromosomeCM018227.1:59921246..59921403 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_13chromosomeD5_13:58336067..58336221 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
At_chr4chromosomeAt_chr4:36707122..36707279 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D13chromosomeD13:60038920..60039077 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D13chromosomeGhir_D13:62819461..62819618 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D13chromosomeD13:63946930..63947087 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:63414880..63415037 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:59662773..59662930 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold29254supercontigscaffold29254:56078..56235 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D13chromosomeGbar_D13:59801489..59801646 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D13chromosomeD13:60756325..60756482 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017635.1chromosomeCM017635.1:60480271..60480428 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017661.1chromosomeCM017661.1:63948699..63948856 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017713.1chromosomeCM017713.1:60283975..60284132 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D13chromosomeD13:64580537..64580694 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:58313727..58313881 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr13chromosomeChr13:62620108..62620282 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr13chromosomeChr13:42455703..42456344 +Gossypium aridum (D4) genome ISU_v1n/a
Germplasm
Stock NameType
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
STV_Contig_2679STV_Contig_2679Gossypium hirsutumsequence_feature


Sequence
>STV0070 ID=STV0070; Name=STV0070; organism=Gossypium hirsutum; type=genetic_marker; length=158bp
ACAAATCCACATTCAATATTCCTATCAAGAATCGAATTATTTTGACAAAG
TCTATTTCAAGTACAAGTCATTTTCATTATTATTATTGAAATCATTTCGG
GCTGTGATTCGATCGATCGGATCACTAGGACATATCAATTCCAAGTCTAG
AACGGCTA