SHIN-0312, SHIN-0312 (genetic_marker) Gossypium hirsutum

Marker Overview
NameSHIN-0312
Genbank IDAJ513190
TypeSSR
SpeciesGossypium hirsutum
GermplasmZhong Mian Suo 12
Source SequenceAJ513190.1
Source TypeEST
Primer 1SHIN-0312_F: GCTAGATAAATCACAACCATCC
Primer 2SHIN-0312_R: GATGGGTTCGAAGGAGTTGA
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ513190
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D05chromosomeD05:3146487..3146668 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A05chromosomeA05:3506548..3506723 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018219.1chromosomeCM018219.1:2935863..2936044 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018206.1chromosomeCM018206.1:3466813..3466988 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:2766667..2766848 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_05chromosomeKI_05:2515852..2516040 +Gossypioides kirkii genome ISU_v3n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:3377106..3377281 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_05chromosomeD10_05:57730914..57731095 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016626.1chromosomeCM016626.1:4764519..4764694 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr9chromosomeDt_chr9:66404636..66404817 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr9chromosomeAt_chr9:50825043..50825218 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:2986928..2987109 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A05chromosomeA05:3011973..3012148 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:3121253..3121434 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A05chromosomeGhir_A05:3506867..3507042 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:2923129..2923310 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:3387043..3387218 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:3031380..3031561 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:3481101..3481275 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:2891674..2891855 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A05chromosomeA05:3885451..3885626 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold8688supercontigscaffold8688:85807..85982 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold6720supercontigscaffold6720:161903..162078 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D05chromosomeGbar_D05:3016284..3016465 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:3175970..3176151 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A05chromosomeA05:3637658..3637833 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:3002589..3002770 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017614.1chromosomeCM017614.1:3468506..3468681 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:3176856..3177043 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017640.1chromosomeCM017640.1:3523371..3523546 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:2997206..2997387 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017692.1chromosomeCM017692.1:3439406..3439581 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:3055842..3056023 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A05chromosomeA05:3590269..3590444 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:3663166..3663341 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:3233642..3233817 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr05chromosomeChr05:2772161..2772342 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_05chromosomeB_05:82815680..82815855 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr09chromosomeChr09:2904124..2904305 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr09chromosomechr09:2735408..2735595 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_09chromosomeChr_09:3055629..3055810 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr09chromosomeChr09:2980022..2980203 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomeChr09:2758910..2759100 +Gossypium aridum (D4) genome ISU_v1n/a
Chr09chromosomeChr09:2207602..2207766 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr09chromosomeChr09:2731296..2731483 +Gossypium lobatum (D7) genome ISU_v1n/a
E05chromosomeE05:3753702..3753883 +Gossypium stocksii (E1) genome NSF_v1n/a
F05chromosomeF05:2934889..2935067 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr13chromosomeChr13:195287614..195287789 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Zhong Mian Suo 12accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ513190.1AJ513190.1Gossypium hirsutumsequence_feature


Sequence
>SHIN-0312 ID=SHIN-0312; Name=SHIN-0312; organism=Gossypium hirsutum; type=genetic_marker; length=182bp
GCTAGATAAATCACAACCATCCATTATTCATCATCATCATCATCAAAGAT
TCAACGGTGCCTACCACGACTTTCATTGAGCCTATTGATCATGTACAGAG
CATTACTGGTAACTTTAGCCACATTCGTGATCTTCCTCTTCACATTAGAT
TTAACCTTGCCGTCAACTCCTTCGAACCCATC