SHIN-0060, SHIN-0060 (genetic_marker) Gossypium hirsutum

Marker Overview
NameSHIN-0060
Genbank IDAJ514141
TypeSSR
SpeciesGossypium hirsutum
GermplasmZhong Mian Suo 12
Source SequenceAJ514141.1
Source TypeEST
Primer 1SHIN-0060_F: TGTGCCAAGTTCACACTTCA
Primer 2SHIN-0060_R: GGAGGTCCTCGTTCTGGATA
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ514141
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D12chromosomeD12:53564659..53564952 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A12chromosomeA12:91590113..91590413 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018226.1chromosomeCM018226.1:50300963..50301251 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018213.1chromosomeCM018213.1:88599216..88599516 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_12chromosomeD5_12:9484348..9484636 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:11602482..11602783 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_12chromosomeD10_12:45302922..45303221 -Gossypium turneri (D10) genome NSF_v1_a2n/a
scaffold968.1supercontigscaffold968.1:301993..302293 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr8chromosomeDt_chr8:46742948..46743241 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D12chromosomeD12:49826290..49826583 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A12chromosomeA12:77103004..77103304 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:52780222..52780515 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A12chromosomeGhir_A12:96234914..96235214 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D12chromosomeD12:51648082..51648375 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A12chromosomeA12:96730614..96730914 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:52410752..52411045 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A12chromosomeA12:94369971..94370271 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:50631374..50631667 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A12chromosomeA12:91481362..91481662 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold468supercontigscaffold468:14543..14843 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold27576supercontigscaffold27576:54356..54644 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D12chromosomeGbar_D12:49602296..49602584 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A12chromosomeGbar_A12:91233735..91234035 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D12chromosomeD12:50745962..50746250 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A12chromosomeA12:90643922..90644222 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017634.1chromosomeCM017634.1:50692487..50692760 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017621.1chromosomeCM017621.1:91687628..91687928 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017660.1chromosomeCM017660.1:53558796..53559074 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017647.1chromosomeCM017647.1:95285211..95285512 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017712.1chromosomeCM017712.1:51365005..51365293 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017699.1chromosomeCM017699.1:90922451..90922751 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D12chromosomeD12:52826677..52826970 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A12chromosomeA12:97861298..97861598 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:98583294..98583595 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr12chromosomeChr12:105762904..105763205 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr12chromosomeChr12:48301490..48301778 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_12chromosomeB_12:77388164..77388460 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr08chromosomeChr08:48570656..48570934 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr08chromosomechr08:37635938..37636331 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_08chromosomeChr_08:35299485..35299784 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr08chromosomeChr08:50026091..50026379 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr08chromosomeChr08:34330163..34330464 -Gossypium aridum (D4) genome ISU_v1n/a
Chr08chromosomeChr08:27020152..27020453 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr08chromosomeChr08:33212628..33212929 -Gossypium lobatum (D7) genome ISU_v1n/a
F12chromosomeF12:81282868..81283165 -Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Zhong Mian Suo 12accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ514141.1AJ514141.1Gossypium hirsutumsequence_feature


Sequence
>SHIN-0060 ID=SHIN-0060; Name=SHIN-0060; organism=Gossypium hirsutum; type=genetic_marker; length=189bp
TGTGCCAAGTTCACACTTCAAAGGTGAAAGGACTGAACTACTATATTGTT
CCACCCCACAAAAACATCCTGTAAAAAAGATAATAAAATAAAATAAAATA
AAATAAAATAAAACTTCATGCTTTGCCATAAAAGCAGCAACCCTGGTTCA
TCAGCACAAAAAGTCATCTTATCCAGAACGAGGACCTCC