NBRI_gPD_66-1, NBRI_gPD_66-1 (genetic_marker) Gossypium herbaceum

Marker Overview
NameNBRI_gPD_66-1
Genbank IDHQ524731
TypeSSR
SpeciesGossypium herbaceum
GermplasmVagad
Source Typegenomic
Repeat Motif(TTC)14
PCR ConditionAnnealing temperature: 52
Primer 1NBRI_gPD_66-1_F: AAACGGTTGTAGCTAGGGTAT
Primer 2NBRI_gPD_66-1_R: ATTTAACGGAGGATTAGCTGT
Product Length137
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankHQ524731
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A12chromosomeA12:4715033..4715151 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A07chromosomeA07:78032242..78032360 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D05chromosomeD05:19554316..19554502 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018213.1chromosomeCM018213.1:4456249..4456430 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
tig00015610_CRI-A2_v1.0.a1chromosometig00015610_CRI-A2_v1.0.a1:331944..332068 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016625.1chromosomeCM016625.1:23018371..23018511 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold5094.1supercontigscaffold5094.1:6538..6656 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A12chromosomeA12:4472120..4472238 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D05chromosomeD05:18937711..18937897 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A12chromosomeGhir_A12:4524679..4524797 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A12chromosomeA12:4341042..4341160 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:18592234..18592420 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A12chromosomeA12:4581823..4581941 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A12chromosomeA12:4551106..4551224 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D05chromosomeD05:18723670..18723856 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt05chromosomeDt05:19585026..19585444 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold9615supercontigscaffold9615:126464..126882 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A12chromosomeGbar_A12:4421801..4421973 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D05chromosomeGbar_D05:18912488..18912677 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A12chromosomeA12:4352976..4353163 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D05chromosomeD05:18919229..18919419 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017621.1chromosomeCM017621.1:4287416..4287546 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017627.1chromosomeCM017627.1:18756986..18757199 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017647.1chromosomeCM017647.1:4609469..4609617 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017699.1chromosomeCM017699.1:4234557..4234732 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017705.1chromosomeCM017705.1:18886330..18886514 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A12chromosomeA12:4580428..4580546 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:7837514..7837653 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr12chromosomeChr12:7776782..7776906 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr05chromosomeChr05:17444511..17444703 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
chr09chromosomechr09:16155291..16155487 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr08chromosomeChr08:6116883..6117018 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomeChr09:15498290..15498429 -Gossypium lobatum (D7) genome ISU_v1n/a
Germplasm
Stock NameType
Vagadaccession
Sequence
>NBRI_gPD_66-1 ID=NBRI_gPD_66-1; Name=NBRI_gPD_66-1; organism=Gossypium herbaceum; type=genetic_marker; length=137bp
AAACGGTTGTAGCTAGGGTATGTCCATTTCTTCTTCTTCTTCTTCTTCTT
CTTCTTCTTCTTCTTCTTCATTTCTTCTTTTTTGCTACCCAATAAGGCTA
TGAGGTTGTTTAAATTACAGCTAATCCTCCGTTAAAT