NBRI_gPD_47, NBRI_gPD_47 (genetic_marker) Gossypium herbaceum

Marker Overview
NameNBRI_gPD_47
Genbank IDHQ524714
TypeSSR
SpeciesGossypium herbaceum
GermplasmVagad
Source Typegenomic
Repeat Motif(CTT)8
PCR ConditionAnnealing temperature: 52
Primer 1NBRI_gPD_47_F: GATTTCGAAGATCGTTAACCT
Primer 2NBRI_gPD_47_R: AATAAGAATCATGGTTTGGTG
Product Length129
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankHQ524714
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A06chromosomeA06:2925552..2925713 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018207.1chromosomeCM018207.1:2731027..2731176 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:2457067..2457219 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold445.1supercontigscaffold445.1:615024..615185 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A06chromosomeA06:2445173..2445334 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:2503290..2503415 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A06chromosomeGhir_A06:2820389..2820547 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A06chromosomeA06:2661954..2662115 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A06chromosomeA06:2735757..2735918 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A06chromosomeA06:2695503..2695664 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt06chromosomeDt06:2096673..2096798 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
At06chromosomeAt06:2450761..2450910 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold3896supercontigscaffold3896:548800..548949 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold11800supercontigscaffold11800:75401..75526 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A06chromosomeGbar_A06:2622640..2622789 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A06chromosomeA06:2685324..2685473 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017615.1chromosomeCM017615.1:2648635..2648811 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017641.1chromosomeCM017641.1:2855353..2855514 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017693.1chromosomeCM017693.1:2758908..2759057 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A06chromosomeA06:2802293..2802454 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:2747395..2747523 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr06chromosomeChr06:2749996..2750148 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr10chromosomeChr10:2463519..2463644 -Gossypium thurberi (D1-5) genome CRI_v1n/a
F06chromosomeF06:2130308..2130436 -Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Vagadaccession
Sequence
>NBRI_gPD_47 ID=NBRI_gPD_47; Name=NBRI_gPD_47; organism=Gossypium herbaceum; type=genetic_marker; length=129bp
GATTTCGAAGATCGTTAACCTGCCATGATTAAGACATTTACTACTGATAG
CACATTCACTTCAAAGTCCATCACCTTCTTCTTCTTCTTCTTCTTCTTTT
TCTTCAACCACCAAACCATGATTCTTATT