NBRI_gPD_29, NBRI_gPD_29 (genetic_marker) Gossypium herbaceum

Marker Overview
NameNBRI_gPD_29
Genbank IDHQ524698
TypeSSR
SpeciesGossypium herbaceum
GermplasmVagad
Source Typegenomic
Repeat Motif(AAG)9
PCR ConditionAnnealing temperature: 51
Primer 1NBRI_gPD_29_F: AATACAAAAGAAGAAGAAGAAG
Primer 2NBRI_gPD_29_R: GCCTTCTTATATAGGTGTGTGT
Product Length140
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankHQ524698
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A11chromosomeA11:2690838..2690974 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018212.1chromosomeCM018212.1:2543495..2543631 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:121912536..121912663 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
A11chromosomeA11:2462458..2462594 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A11chromosomeGhir_A11:2531659..2531795 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A11chromosomeA11:2446646..2446782 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:2410463..2410599 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:2561029..2561165 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold47066supercontigscaffold47066:14283..14419 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A11chromosomeGbar_A11:2159571..2159707 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A11chromosomeA11:2575705..2575841 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017620.1chromosomeCM017620.1:2553164..2553300 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017646.1chromosomeCM017646.1:2632639..2632778 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017698.1chromosomeCM017698.1:2552678..2552811 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A11chromosomeA11:2572917..2573053 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:2608095..2608231 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:2526073..2526200 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
F11chromosomeF11:2174959..2175094 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr07chromosomeNBRI_gPD_29:1..638 .
Chr07:2137767..2138541 -		n/a
Germplasm
Stock NameType
Vagadaccession
Sequence
>NBRI_gPD_29 ID=NBRI_gPD_29; Name=NBRI_gPD_29; organism=Gossypium herbaceum; type=genetic_marker; length=137bp
AATACAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAATTAAAAGGAATAGG
ATACCTTGCCTCAGAAGTAAATGCATACGGCAATCAGTGATTTTCCGCTG
CTGGGAAACTTGTAAACACACACCTATATAAGAAGGC