NBRI_gPD_28, NBRI_gPD_28 (genetic_marker) Gossypium herbaceum

Marker Overview
NameNBRI_gPD_28
Genbank IDHQ524697
TypeSSR
SpeciesGossypium herbaceum
GermplasmVagad
Source Typegenomic
Repeat Motif(AAG)11
PCR ConditionAnnealing temperature: 52
Primer 1NBRI_gPD_28_F: AAGGGAGAGGATAATGGAAG
Primer 2NBRI_gPD_28_R: TTTTCTCCCACCAGTTTTTAT
Product Length141
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankHQ524697
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A03chromosomeA03:28248295..28248430 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018204.1chromosomeCM018204.1:24385295..24385438 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:52007105..52007241 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr12chromosomeAt_chr12:68076453..68076588 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A03chromosomeA03:26061660..26061795 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D02chromosomeGhir_D02:20906935..20907038 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A03chromosomeGhir_A03:25900572..25900707 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A03chromosomeA03:24694467..24694602 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:25479232..25479367 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:24494809..24494944 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At03chromosomeAt03:27830332..27830472 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold2783supercontigscaffold2783:208206..208346 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A03chromosomeGbar_A03:24408465..24408605 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A03chromosomeA03:24311404..24311541 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017612.1chromosomeCM017612.1:24710443..24710586 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017638.1chromosomeCM017638.1:25315455..25315595 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017690.1chromosomeCM017690.1:24490657..24490797 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A03chromosomeA03:25937343..25937478 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:83786261..83786401 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
B_03chromosomeB_03:63308955..63309101 +Gossypium anomalum (B1) genome NSF_v1n/a
F03chromosomeF03:25303136..25303281 -Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Vagadaccession
Sequence
>NBRI_gPD_28 ID=NBRI_gPD_28; Name=NBRI_gPD_28; organism=Gossypium herbaceum; type=genetic_marker; length=141bp
AAGGGAGAGGATAATGGAAGAGATTGAAAGGGAAAGGAAAAGAAAAAAAA
TCCAAGAAAAAATCTCTACAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA
AGGAAAAAAAAAAGAGCGACATAAAAACTGGTGGGAGAAAA