NBRI_gPD_24, NBRI_gPD_24 (genetic_marker) Gossypium herbaceum

Marker Overview
NameNBRI_gPD_24
Genbank IDHQ524692
TypeSSR
SpeciesGossypium herbaceum
GermplasmVagad
Source Typegenomic
Repeat Motif(TCT)7
PCR ConditionAnnealing temperature: 51
Primer 1NBRI_gPD_24_F: TCATGGACCAAGAAGTCTTTA
Primer 2NBRI_gPD_24_R: CCCATTTAAGAGCCCTAAC
Product Length138
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankHQ524692
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A06chromosomeA06:16389593..16389730 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018207.1chromosomeCM018207.1:15636934..15637071 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:11638103..11638289 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr10chromosomeAt_chr10:74747124..74747261 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A06chromosomeA06:15223867..15224004 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A06chromosomeGhir_A06:16665053..16665190 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A06chromosomeA06:15979456..15979593 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A06chromosomeA06:16546875..16547012 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A06chromosomeA06:15965072..15965209 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold1579supercontigscaffold1579:271727..271864 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A06chromosomeGbar_A06:15561162..15561299 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A06chromosomeA06:15610873..15611010 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017615.1chromosomeCM017615.1:16497722..16497859 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017641.1chromosomeCM017641.1:15995418..15995555 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017693.1chromosomeCM017693.1:15955412..15955549 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A06chromosomeA06:16705254..16705391 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:16305656..16305793 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr06chromosomeChr06:17076752..17076935 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr10chromosomeChr10:8214682..8214842 +Gossypium aridum (D4) genome ISU_v1n/a
Chr10chromosomeChr10:8650765..8650905 +Gossypium lobatum (D7) genome ISU_v1n/a
F06chromosomeF06:14592904..14593041 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr06chromosomeChr06:174516681..174516816 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr03chromosomeChr03:124826631..124826769 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Vagadaccession
Sequence
>NBRI_gPD_24 ID=NBRI_gPD_24; Name=NBRI_gPD_24; organism=Gossypium herbaceum; type=genetic_marker; length=138bp
TCATGGACCAAGAAGTCTTTAAATTGGTTGGGTTTCCATAATAGTGCATC
GAAATCATGGTTGGCATCTCCATTTCTTCTCTTCTTCTTCTTCTTCTTCT
CCTATTTTTTTACTGCCCAGTTAGGGCTCTTAAATGGG