NBRI_gPD_23, NBRI_gPD_23 (genetic_marker) Gossypium herbaceum

Marker Overview
NameNBRI_gPD_23
Genbank IDHQ524691
TypeSSR
SpeciesGossypium herbaceum
GermplasmVagad
Source Typegenomic
Repeat Motif(TTC)5
PCR ConditionAnnealing temperature: 52
Primer 1NBRI_gPD_23_F: TTCTTCCTTCTTTCGTCTCTT
Primer 2NBRI_gPD_23_R: ACGGAAGTTCTACAATCAACA
Product Length154
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankHQ524691
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A09chromosomeA09:59474755..59474908 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018210.1chromosomeCM018210.1:55275005..55275158 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:61772697..61772850 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr6chromosomeAt_chr6:44564735..44564888 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A09chromosomeA09:54407165..54407318 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A09chromosomeGhir_A09:59241933..59242086 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A09chromosomeA09:61413412..61413565 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A09chromosomeA09:60938567..60938720 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A09chromosomeA09:57880883..57881036 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At09chromosomeAt09:55496523..55496676 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold5483supercontigscaffold5483:91614..91767 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A09chromosomeGbar_A09:55928248..55928401 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A09chromosomeA09:57275087..57275240 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017618.1chromosomeCM017618.1:56803802..56803955 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017644.1chromosomeCM017644.1:59747231..59747384 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017696.1chromosomeCM017696.1:57056951..57057104 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A09chromosomeA09:62276079..62276232 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:61162593..61162746 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr09chromosomeChr09:64292398..64292551 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
Vagadaccession
Sequence
>NBRI_gPD_23 ID=NBRI_gPD_23; Name=NBRI_gPD_23; organism=Gossypium herbaceum; type=genetic_marker; length=154bp
TTCTTCCTTCTTTCGTCTCTTCCCTTTAGTTTTCTCTTTTTTTCTTCTTC
TTCTTCATTCAAATACTGCTTGGATTTACACTTTTTTACTACCATTGTCG
GGAAAGTATGCATGTCATTAATTGTGTGAATTTTGTTGATTGTAGAACTT
CCGT