NBRI_gM195, NBRI_gM195 (genetic_marker) Gossypium herbaceum

Marker Overview
NameNBRI_gM195
Genbank IDJF495686
TypeSSR
SpeciesGossypium herbaceum
GermplasmVagad
Source Typegenomic
Repeat Motif(GAT)5
PCR ConditionAnnealing temperature: 55
Primer 1NBRI_gM195_F: AGGATGATGATGATGACTATGA
Primer 2NBRI_gM195_R: GACGAAATTGCAGACACTTAT
Product Length161
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankJF495686
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A07chromosomeA07:64594048..64594211 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018208.1chromosomeCM018208.1:63710391..63710554 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Dt_chr1chromosomeDt_chr1:86877378..86877541 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr5chromosomeAt_chr5:45892225..45892388 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A07chromosomeA07:57086441..57086604 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A07chromosomeGhir_A07:66311669..66311832 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A07chromosomeA07:65696143..65696306 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A07chromosomeA07:66606799..66606962 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A07chromosomeA07:64641487..64641650 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At07chromosomeAt07:62950283..62950446 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold5537supercontigscaffold5537:230755..230918 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A07chromosomeGbar_A07:62711025..62711188 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A07chromosomeA07:64624062..64624225 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017616.1chromosomeCM017616.1:65998731..65998894 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017642.1chromosomeCM017642.1:67358702..67358865 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017694.1chromosomeCM017694.1:64528694..64528857 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A07chromosomeA07:67585865..67586028 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:70189793..70189956 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Germplasm
Stock NameType
Vagadaccession
Sequence
>NBRI_gM195 ID=NBRI_gM195; Name=NBRI_gM195; organism=Gossypium herbaceum; type=genetic_marker; length=161bp
AGGATGATGATGATGACTATGACGATGATGATGATGATGGTGCTGCTGCA
GATGAGGACGATAAAATTAAATGCATGACTTTTCGTGGTGTTGCAAAACA
AATGTGATCGCTGCTAGTTATTTTCTTTTCTTTTAATTTAATAAGTGTCT
GCAATTTCGTC