NBRI_gM175, NBRI_gM175 (genetic_marker) Gossypium herbaceum

Marker Overview
NameNBRI_gM175
Genbank IDJF495666
TypeSSR
SpeciesGossypium herbaceum
GermplasmVagad
Source Typegenomic
Repeat Motif(GAA)5
PCR ConditionAnnealing temperature: 55
Primer 1NBRI_gM175_F: GCAGAGTCTTGAATGAGAGAA
Primer 2NBRI_gM175_R: TCCTGTATTTCAATTCCAAAG
Product Length153
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankJF495666
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D10chromosomeD10:57993741..57993893 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A10chromosomeA10:101274076..101274228 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018224.1chromosomeCM018224.1:55317593..55317745 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018211.1chromosomeCM018211.1:98932477..98932629 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:9571935..9572087 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_10chromosomeKI_10:6928002..6928160 +Gossypioides kirkii genome ISU_v3n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:13763941..13764093 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_10chromosomeD10_10:10036362..10036514 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016623.1chromosomeCM016623.1:128221920..128222072 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr11chromosomeDt_chr11:46850721..46850873 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D10chromosomeD10:55084026..55084178 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A10chromosomeA10:90575308..90575460 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D10chromosomeGhir_D10:57798874..57799026 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A10chromosomeGhir_A10:104336578..104336730 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:57641516..57641668 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:105161998..105162150 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:56503907..56504059 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:104461782..104461934 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:54183678..54183830 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A10chromosomeA10:99565361..99565513 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt10chromosomeDt10:58030833..58030985 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold2498supercontigscaffold2498:133356..133508 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold2498supercontigscaffold2498:132193..132345 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold10040supercontigscaffold10040:8534..8686 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D10chromosomeGbar_D10:55303568..55303720 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A10chromosomeGbar_A10:99250413..99250565 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:56276591..56276743 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A10chromosomeA10:100822563..100822715 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017632.1chromosomeCM017632.1:55346148..55346300 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017619.1chromosomeCM017619.1:100259511..100259663 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:57495561..57495713 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017645.1chromosomeCM017645.1:107608481..107608633 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:56724489..56724641 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017697.1chromosomeCM017697.1:102353827..102353979 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:57870721..57870873 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A10chromosomeA10:107548630..107548782 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:116038672..116038824 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:110435129..110435281 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr10chromosomeChr10:52762957..52763109 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_10chromosomeB_10:13873436..13873591 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr11chromosomeChr11:54609249..54609401 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr11chromosomechr11:45021896..45022048 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_11chromosomeChr_11:36113482..36113634 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr11chromosomeChr11:55813059..55813211 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:39461140..39461292 -Gossypium aridum (D4) genome ISU_v1n/a
Chr11chromosomeChr11:30155621..30155773 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr11chromosomeChr11:38772055..38772201 -Gossypium lobatum (D7) genome ISU_v1n/a
E10chromosomeE10:15103980..15104138 +Gossypium stocksii (E1) genome NSF_v1n/a
F10chromosomeF10:83700023..83700174 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr10chromosomeChr10:13633156..13633311 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr11chromosomeNBRI_gM175:2..307 .
Chr11:53130762..53131065 -		n/a
Chr11chromosomeNBRI_gM175:2..307 .
Chr11:38523126..38523429 -		n/a
Germplasm
Stock NameType
Vagadaccession
Sequence
>NBRI_gM175 ID=NBRI_gM175; Name=NBRI_gM175; organism=Gossypium herbaceum; type=genetic_marker; length=153bp
GCAGAGTCTTGAATGAGAGAAAAAGTATGGCTATAATGATGAGATGAGGA
AGAAGAAGAAGAAGGCTTGAGATTGGAAGGTGATAATAGAGGGGCTGAGT
GGTGTTGTTGAAGACGGCTCCTTGTAAATAGTCTTTGGAATTGAAATACA
GGA