NBRI_gM115, NBRI_gM115 (genetic_marker) Gossypium herbaceum

Marker Overview
NameNBRI_gM115
Genbank IDJF495606
TypeSSR
SpeciesGossypium herbaceum
GermplasmVagad
Source Typegenomic
Repeat Motif(AT)7
PCR ConditionAnnealing temperature: 54
Primer 1NBRI_gM115_F: CGCAATTACTTAGTTCCTTCA
Primer 2NBRI_gM115_R: TTGGTATAGAATTCGACCTTT
Product Length115
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankJF495606
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A07chromosomeA07:592429..592541 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D07chromosomeD07:752063..752177 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018208.1chromosomeCM018208.1:665652..665764 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018221.1chromosomeCM018221.1:572608..572720 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_07chromosomeD5_07:620324..620452 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:663635..663751 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold769.1supercontigscaffold769.1:135531..135645 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold477.1supercontigscaffold477.1:347637..347749 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A07chromosomeA07:566774..566886 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D07chromosomeD07:693129..693243 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A07chromosomeGhir_A07:580832..580944 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D07chromosomeGhir_D07:690959..691073 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A07chromosomeA07:562206..562318 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D07chromosomeD07:672204..672318 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A07chromosomeA07:584594..584706 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D07chromosomeD07:686294..686408 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A07chromosomeA07:585185..585297 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D07chromosomeD07:599038..599152 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At07chromosomeAt07:487109..487221 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold26799supercontigscaffold26799:121307..121419 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold19346supercontigscaffold19346:171644..171756 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D07chromosomeGbar_D07:691833..691945 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A07chromosomeGbar_A07:696990..697102 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D07chromosomeD07:668767..668879 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A07chromosomeA07:654869..654981 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017616.1chromosomeCM017616.1:527304..527418 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017629.1chromosomeCM017629.1:1120013..1120125 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017642.1chromosomeCM017642.1:572358..572472 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017655.1chromosomeCM017655.1:606793..606905 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017694.1chromosomeCM017694.1:655006..655118 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017707.1chromosomeCM017707.1:692427..692543 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A07chromosomeA07:611430..611542 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D07chromosomeD07:709443..709557 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:679866..679982 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr07chromosomeChr07:699869..699985 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr07chromosomeChr07:52909816..52909939 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_07chromosomeB_07:777562..777676 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr01chromosomeChr01:603227..603341 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_01chromosomeChr_01:566047..566169 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr_01chromosomeChr_01:564948..565072 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr01chromosomeChr01:648659..648781 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr01chromosomeChr01:439237..439372 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr01chromosomeChr01:518676..518795 -Gossypium lobatum (D7) genome ISU_v1n/a
E07chromosomeE07:93670844..93670958 +Gossypium stocksii (E1) genome NSF_v1n/a
F07chromosomeF07:663450..663564 -Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Vagadaccession
Sequence
>NBRI_gM115 ID=NBRI_gM115; Name=NBRI_gM115; organism=Gossypium herbaceum; type=genetic_marker; length=115bp
CGCAATTACTTAGTTCCTTCAAATTATGTATGGATTTTAATTGCAGAAAT
AATAGTCAAAACTACCATATATATATATATGACTTCTTAAAAANAAAGGT
CGAATTCTATACCAA