NBRI_gL028, NBRI_gL028 (genetic_marker) Gossypium herbaceum

Marker Overview
NameNBRI_gL028
Genbank IDHQ524571
TypeSSR
SpeciesGossypium herbaceum
GermplasmVagad
Source Typegenomic
Repeat Motif(GAA)8
PCR ConditionAnnealing temperature: 53
Primer 1NBRI_gL028_F: CAAATGTTGTCTCCTAACAACTGG
Primer 2NBRI_gL028_R: TCTTTGAGCCTCGTTGATCTC
Product Length202
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankHQ524571
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D03chromosomeD03:3442648..3442831 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A02chromosomeA02:86738011..86738215 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018217.1chromosomeCM018217.1:3170922..3171106 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018203.1chromosomeCM018203.1:96427158..96427362 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_02chromosomeD5_02:3176339..3176522 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_06chromosomeKI_06:42930068..42930257 +Gossypioides kirkii genome ISU_v3n/a
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:3148245..3148449 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_02chromosomeD10_02:3049246..3049429 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016615.1chromosomeCM016615.1:4542211..4542412 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold1213.1supercontigscaffold1213.1:155604..155808 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr3chromosomeDt_chr3:26206591..26206774 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D03chromosomeD03:3170958..3171141 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A02chromosomeA02:80110129..80110333 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Scaffold3262supercontigScaffold3262:33662..33845 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A02chromosomeGhir_A02:104541722..104541926 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D03chromosomeD03:3191655..3191838 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A02chromosomeA02:104786602..104786806 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D03chromosomeD03:3258123..3258306 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A02chromosomeA02:102156500..102156704 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D03chromosomeD03:3266376..3266559 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A02chromosomeA02:100774776..100774980 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At02chromosomeAt02:85460254..85460458 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold18376supercontigscaffold18376:112695..112899 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold11750supercontigscaffold11750:35546..35730 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D03chromosomeGbar_D03:3130972..3131156 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A02chromosomeGbar_A02:96594571..96594775 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D03chromosomeD03:3188469..3188652 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A02chromosomeA02:98608571..98608775 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017625.1chromosomeCM017625.1:3162123..3162306 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017611.1chromosomeCM017611.1:101407367..101407571 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017651.1chromosomeCM017651.1:3298753..3298936 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017637.1chromosomeCM017637.1:106245709..106245919 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017703.1chromosomeCM017703.1:3160908..3161091 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017689.1chromosomeCM017689.1:98793308..98793512 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D03chromosomeD03:3362540..3362723 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A02chromosomeA02:104643835..104644039 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr02chromosomeChr02:88991288..88991492 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr02chromosomeChr02:98573065..98573269 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr02chromosomeChr02:3048308..3048491 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_04chromosomeB_04:70304659..70304845 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr03chromosomeChr03:3067990..3068173 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr03chromosomechr03:2899230..2899413 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_03chromosomeChr_03:2284849..2285032 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr03chromosomeChr03:3224842..3225025 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr03chromosomeChr03:2371190..2371373 +Gossypium aridum (D4) genome ISU_v1n/a
Chr03chromosomeChr03:2183064..2183247 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr03chromosomeChr03:2694302..2694485 +Gossypium lobatum (D7) genome ISU_v1n/a
E02chromosomeE02:4241192..4241387 +Gossypium stocksii (E1) genome NSF_v1n/a
F02chromosomeF02:3139306..3139501 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr03chromosomeNBRI_gL028:2..483 .
Chr03:3156001..3156465 +		n/a
scaffold437supercontigNBRI_gL028:2..483 .
scaffold437:158302..158766 -		n/a
Germplasm
Stock NameType
Vagadaccession
Sequence
>NBRI_gL028 ID=NBRI_gL028; Name=NBRI_gL028; organism=Gossypium herbaceum; type=genetic_marker; length=202bp
CAAATGTTGTCTCCTAACAACTGGAAGTATCTTTGCTGTAATGAATCAAT
GAAAAACACTGTAAAGGGAACTCATTTGAAGAAGAAGAAGAAGAAGAAGA
AGCAAGTTAGAGGGTGTCATGAGAACATTACATACCGGCATGTTTGCTAT
TGGTCGGTGTTCCAGATTCAGCGAGCACTTCGAGATCAACGAGGCTCAAA
GA