NBRI_gL025, NBRI_gL025 (genetic_marker) Gossypium herbaceum

Marker Overview
NameNBRI_gL025
Genbank IDHQ524568
TypeSSR
SpeciesGossypium herbaceum
GermplasmVagad
Source Typegenomic
Repeat Motif(AGA)5...(AGA)5
PCR ConditionAnnealing temperature: 52
Primer 1NBRI_gL025_F: AGCCAACATCGCAGTGACTA
Primer 2NBRI_gL025_R: CGCTCCCTTGTTTTATGTCC
Product Length175
Publication[view all]
CommentCompound Imperfect; Primer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankHQ524568
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D05chromosomeD05:16631574..16631730 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A05chromosomeA05:17704046..17704217 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018219.1chromosomeCM018219.1:15693760..15693916 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018206.1chromosomeCM018206.1:17273948..17274110 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:14700348..14700498 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:17475552..17475735 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_05chromosomeD10_05:45659694..45659850 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016626.1chromosomeCM016626.1:25815080..25815233 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold1899.1supercontigscaffold1899.1:223404..223575 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:15705823..15705979 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A05chromosomeA05:15999212..15999383 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:16184276..16184432 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A05chromosomeGhir_A05:17630735..17630906 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:15795782..15795938 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:17088158..17088329 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:16006293..16006449 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:17644237..17644408 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:15900451..15900607 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A05chromosomeA05:17816985..17817156 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt05chromosomeDt05:16483368..16483524 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
At05chromosomeAt05:12817735..12817891 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
At05chromosomeAt05:12813343..12813499 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold5733supercontigscaffold5733:370702..370858 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold5733supercontigscaffold5733:366310..366466 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold15880supercontigscaffold15880:97771..97927 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D05chromosomeGbar_D05:16066698..16066854 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A05chromosomeGbar_A05:16885124..16885286 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:16045062..16045218 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A05chromosomeA05:17566332..17566494 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:15941531..15941687 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017614.1chromosomeCM017614.1:17296125..17296287 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:16383602..16383758 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017640.1chromosomeCM017640.1:17674650..17674812 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:16040235..16040391 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017692.1chromosomeCM017692.1:17097840..17098002 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:16387213..16387369 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A05chromosomeA05:17915982..17916153 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:18546161..18546332 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:17350187..17350370 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr05chromosomeChr05:14767897..14768047 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_05chromosomeB_05:68896905..68897064 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr09chromosomeChr09:15401356..15401515 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr09chromosomechr09:13747628..13747784 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_09chromosomeChr_09:12991751..12991907 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr09chromosomeChr09:15812057..15812216 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomeChr09:13185291..13185447 -Gossypium aridum (D4) genome ISU_v1n/a
Chr09chromosomeChr09:11407168..11407321 -Gossypium gossypioides (D6) genome ISU_v1n/a
E05chromosomeE05:18958376..18958538 -Gossypium stocksii (E1) genome NSF_v1n/a
F05chromosomeF05:14985688..14985844 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr13chromosomeChr13:175669096..175669258 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr09chromosomeNBRI_gL025:1..175 .
Chr09:14660441..14660591 -		n/a
Chr9chromosomeNBRI_gL025:1..175 .
Chr9:22217563..22217713 -		n/a
Germplasm
Stock NameType
Vagadaccession
Sequence
>NBRI_gL025 ID=NBRI_gL025; Name=NBRI_gL025; organism=Gossypium herbaceum; type=genetic_marker; length=175bp
AGCCAACATCGCAGTGACTATTTCAACCATGTTAGAGAATAACATGCTAG
CAGTGACTCAGAAGAAGAAGAAGAAGGAGAAGAAGAAGAAGAAGGAGGAT
ATTGAAAGAAGAGAAGGTGGTGAGGAGAAATGGGAATTTGTTGGATCTAA
TTTAAGGACATAAAACAAGGGAGCG