NBRI_gK001, NBRI_gK001 (genetic_marker) Gossypium herbaceum

Marker Overview
NameNBRI_gK001
Genbank IDHQ524529
TypeSSR
SpeciesGossypium herbaceum
GermplasmVagad
Source Typegenomic
Repeat Motif(TCT)6
PCR ConditionAnnealing temperature: 52
Primer 1NBRI_gK001_F: ATATCGCCTCCTTCCTTCCT
Primer 2NBRI_gK001_R: GATGAGGCTGCAGATGATGA
Product Length150
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankHQ524529
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D02chromosomeD02:2136985..2137122 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A02chromosomeA02:1665710..1665859 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018216.1chromosomeCM018216.1:1770897..1771034 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018203.1chromosomeCM018203.1:1659730..1659879 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
KI_03chromosomeKI_03:1451009..1451140 +Gossypioides kirkii genome ISU_v3n/a
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:1734211..1734360 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_03chromosomeD10_03:62829668..62829805 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016616.1chromosomeCM016616.1:151507655..151507795 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold1140.1supercontigscaffold1140.1:146674..146811 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold171.1supercontigscaffold171.1:322786..322935 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D02chromosomeD02:2100660..2100797 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A02chromosomeA02:1606660..1606809 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A02chromosomeA02:1600921..1601058 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D02chromosomeGhir_D02:2034797..2034934 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A02chromosomeGhir_A02:1756835..1756984 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D02chromosomeD02:1858757..1858894 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A02chromosomeA02:1658685..1658834 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D02chromosomeD02:2048023..2048160 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A02chromosomeA02:1754504..1754653 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D02chromosomeD02:1913072..1913209 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A02chromosomeA02:1689904..1690053 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt02chromosomeDt02:1659794..1659931 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold12917supercontigscaffold12917:176156..176293 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold24539supercontigscaffold24539:160229..160378 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D02chromosomeGbar_D02:1961700..1961837 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A02chromosomeGbar_A02:1654459..1654608 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D02chromosomeD02:1777108..1777245 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A02chromosomeA02:1662111..1662260 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017624.1chromosomeCM017624.1:2064818..2064955 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017611.1chromosomeCM017611.1:1660943..1661092 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017650.1chromosomeCM017650.1:2181089..2181226 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017637.1chromosomeCM017637.1:1746526..1746675 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017702.1chromosomeCM017702.1:1675691..1675828 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017689.1chromosomeCM017689.1:1668825..1668974 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D02chromosomeD02:2051805..2051942 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A02chromosomeA02:1767747..1767896 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:130748337..130748486 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr03chromosomeChr03:129142768..129142917 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr03chromosomeChr03:1757597..1757734 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_03chromosomeB_03:105210301..105210453 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr05chromosomeChr05:1908041..1908178 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr05chromosomechr05:1590529..1590666 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_05chromosomeChr_05:1903721..1903858 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr05chromosomeChr05:2141085..2141222 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr05chromosomeChr05:1633765..1633902 +Gossypium aridum (D4) genome ISU_v1n/a
Chr05chromosomeChr05:1346619..1346759 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr05chromosomeChr05:1623642..1623779 +Gossypium lobatum (D7) genome ISU_v1n/a
E03chromosomeE03:2671049..2671186 +Gossypium stocksii (E1) genome NSF_v1n/a
F03chromosomeF03:1684796..1684957 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr03chromosomeChr03:203469961..203470110 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr05chromosomeNBRI_gK001:2..430 .
Chr05:1706964..1707380 +		n/a
scaffold370supercontigNBRI_gK001:2..430 .
scaffold370:348359..348775 -		n/a
Germplasm
Stock NameType
Vagadaccession
Sequence
>NBRI_gK001 ID=NBRI_gK001; Name=NBRI_gK001; organism=Gossypium herbaceum; type=genetic_marker; length=150bp
ATATCGCCTCCTTCCTTCCTGTTCTTCTTCACCCTCTTCATCATCACCTT
CATCTTCTTCGTCTTCTTCTTCTTCTTCTTCATCTTCACCCTCAGCCTCT
TCATCACCCTCATCTTCAGCATCATTTTGGTCATCATCTGCAGCCTCATC