NBRI_gD112, NBRI_gD112 (genetic_marker) Gossypium herbaceum

Marker Overview
NameNBRI_gD112
Genbank IDHQ524384
TypeSSR
SpeciesGossypium herbaceum
GermplasmVagad
Source Typegenomic
Repeat Motif(ATG)5...(TGA)7...(GAT)6
PCR ConditionAnnealing temperature: 50
Primer 1NBRI_gD112_F: ATTCCTTCATGGCTCAAACTG
Primer 2NBRI_gD112_R: TTCCCTGATGGACATTATTGG
Product Length190
Publication[view all]
CommentCompound Imperfect; Primer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankHQ524384
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D11chromosomeD11:43111887..43112088 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
scaffold_1377supercontigscaffold_1377:20586..20790 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018225.1chromosomeCM018225.1:39493814..39494015 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018212.1chromosomeCM018212.1:61366432..61366636 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_11chromosomeD5_11:28250245..28250446 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_11chromosomeD5_11:28239191..28239392 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:55569169..55569361 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_11chromosomeD10_11:37998294..37998495 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016624.1chromosomeCM016624.1:80441780..80441996 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr2chromosomeDt_chr2:31944522..31944723 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr1chromosomeAt_chr1:19888432..19888636 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold2949_A11supercontigscaffold2949_A11:273566..273770 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D11chromosomeD11:40636249..40636450 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:40918798..40918999 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A11chromosomeGhir_A11:66507286..66507490 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D11chromosomeD11:39983910..39984111 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:64189834..64190038 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:40987050..40987251 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:64728265..64728469 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:40316722..40316923 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A11chromosomeA11:63027105..63027309 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt11chromosomeDt11:44141033..44141234 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold7374supercontigscaffold7374:1918..2119 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold3783supercontigscaffold3783:146786..146990 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D11chromosomeGbar_D11:39765490..39765691 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A11chromosomeGbar_A11:61184557..61184761 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D11chromosomeD11:39611702..39611903 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A11chromosomeA11:61699680..61699884 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017633.1chromosomeCM017633.1:40260856..40261048 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017620.1chromosomeCM017620.1:64348502..64348706 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017659.1chromosomeCM017659.1:40965106..40965307 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017646.1chromosomeCM017646.1:67441594..67441798 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017711.1chromosomeCM017711.1:39539260..39539461 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017698.1chromosomeCM017698.1:61915883..61916063 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D11chromosomeD11:41295352..41295553 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A11chromosomeA11:66296706..66296910 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:55476213..55476402 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:68514223..68514415 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr11chromosomeChr11:26230000..26230201 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr11chromosomeChr11:26218971..26219172 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_11chromosomeB_11:53802108..53802303 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr07chromosomeChr07:38848019..38848220 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr07chromosomechr07:31258500..31258704 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_07chromosomeChr_07:29731302..29731503 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr07chromosomeChr07:26549289..26549612 -Gossypium aridum (D4) genome ISU_v1n/a
Chr07chromosomeChr07:23511179..23511386 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr07chromosomeChr07:28341749..28341956 -Gossypium lobatum (D7) genome ISU_v1n/a
E11chromosomeE11:59196478..59196661 +Gossypium stocksii (E1) genome NSF_v1n/a
F11chromosomeF11:53013936..53014140 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr11chromosomeChr11:73580381..73580555 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Vagadaccession
Sequence
>NBRI_gD112 ID=NBRI_gD112; Name=NBRI_gD112; organism=Gossypium herbaceum; type=genetic_marker; length=190bp
ATTCCTTCATGGCTCAAACTGCAGAGTTCTTTCTTTGCACATTTCATGTG
CTTTGATGTTCCTGGGCTTGCTCCCCCAAGAAATGAGAGTGGATCATATG
ATGATGATGATGATTGTGATGGTGATGATGATGATGATGATGAGGATGAG
GATGATGATGATGATGATACCAATAATGTCCATCAGGGAA