NBRI_gF004, NBRI_gF004 (genetic_marker) Gossypium herbaceum

Marker Overview
NameNBRI_gF004
Genbank IDHQ524406
TypeSSR
SpeciesGossypium herbaceum
GermplasmVagad
Source Typegenomic
Repeat Motif(TCA)7
PCR ConditionAnnealing temperature: 51
Primer 1NBRI_gF004_F: TTATCAACAACCCCAACAGGA
Primer 2NBRI_gF004_R: CCATCAAGGAATCTGGGAAG
Product Length150
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankHQ524406
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A07chromosomeA07:91782229..91782372 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018208.1chromosomeCM018208.1:91790894..91791043 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_07chromosomeD5_07:49458666..49458794 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_07chromosomeKI_07:427172..427294 +Gossypioides kirkii genome ISU_v3n/a
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:95236121..95236270 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_07chromosomeD10_07:922422..922550 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016620.1chromosomeCM016620.1:3564000..3564143 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr1chromosomeDt_chr1:85749938..85750081 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A07chromosomeA07:76263388..76263531 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D07chromosomeGhir_D07:57185180..57185305 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A07chromosomeGhir_A07:95698755..95698898 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A07chromosomeA07:94652106..94652249 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A07chromosomeA07:94711299..94711442 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A07chromosomeA07:91223879..91224022 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt07chromosomeDt07:58692130..58692258 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold8364supercontigscaffold8364:16753..16881 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold8554supercontigscaffold8554:465398..465547 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D07chromosomeGbar_D07:54398781..54398909 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A07chromosomeGbar_A07:90730297..90730446 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A07chromosomeA07:93036123..93036272 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017616.1chromosomeCM017616.1:94757459..94757602 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017655.1chromosomeCM017655.1:55978148..55978276 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017642.1chromosomeCM017642.1:97712152..97712289 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017694.1chromosomeCM017694.1:93079953..93080102 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A07chromosomeA07:96895121..96895264 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:98563071..98563220 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr07chromosomeChr07:99885447..99885596 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr07chromosomeChr07:2015297..2015425 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_07chromosomeB_07:82272564..82272698 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr01chromosomeChr01:53891932..53892060 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_01chromosomeChr_01:38639788..38639916 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr01chromosomeChr01:40702506..40702634 +Gossypium aridum (D4) genome ISU_v1n/a
Chr01chromosomeChr01:31712692..31712835 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr01chromosomeChr01:39301331..39301459 +Gossypium lobatum (D7) genome ISU_v1n/a
E07chromosomeE07:3374168..3374311 -Gossypium stocksii (E1) genome NSF_v1n/a
Chr01chromosomeNBRI_gF004:1..480 .
Chr01:53512336..53512795 +		n/a
Chr1chromosomeNBRI_gF004:1..480 .
Chr1:3985703..3986162 -		n/a
Germplasm
Stock NameType
Vagadaccession
Sequence
>NBRI_gF004 ID=NBRI_gF004; Name=NBRI_gF004; organism=Gossypium herbaceum; type=genetic_marker; length=150bp
TTATCAACAACCCCAACAGGATTTCCTTGTTGAAAATCAGACCCATCATT
CTCTTCCACTTCTTCTTTTTCATCATCATCATCATCATCATCCTCATCAT
CATATTCACTTCCACTTCCATCATCTGGGTCTTCCCAGATTCCTTGATGG