NBRI_gA107, NBRI_gA107 (genetic_marker) Gossypium herbaceum

Marker Overview
NameNBRI_gA107
Genbank IDHQ524331
TypeSSR
SpeciesGossypium herbaceum
GermplasmVagad
Source Typegenomic
Repeat Motif(TG)9...(TG)7
PCR ConditionAnnealing temperature: 50
Primer 1NBRI_gA107_F: CTTGGGTGAATTGTAGAACCA
Primer 2NBRI_gA107_R: TGCCAACTATACTCGTAACCC
Product Length217
Publication[view all]
CommentCompound Imperfect; Primer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankHQ524331
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A07chromosomeA07:17362940..17363141 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018208.1chromosomeCM018208.1:17221599..17221802 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:15913914..15914111 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr9chromosomeAt_chr9:77385520..77385721 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A07chromosomeA07:16548285..16548486 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A07chromosomeGhir_A07:17633444..17633645 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A07chromosomeA07:16889824..16890025 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A07chromosomeA07:17659861..17660062 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A07chromosomeA07:17635032..17635233 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold15987supercontigscaffold15987:41748..41951 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A07chromosomeGbar_A07:17203984..17204187 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A07chromosomeA07:17216493..17216696 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017616.1chromosomeCM017616.1:17153829..17154038 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017642.1chromosomeCM017642.1:17158244..17158451 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017694.1chromosomeCM017694.1:17490671..17490872 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A07chromosomeA07:17804822..17805023 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:18369465..18369682 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr07chromosomeChr07:18616937..18617134 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_07chromosomeB_07:17788015..17788248 +Gossypium anomalum (B1) genome NSF_v1n/a
F07chromosomeF07:15996235..15996442 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr07chromosomeChr07:30284517..30284737 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Vagadaccession
Sequence
>NBRI_gA107 ID=NBRI_gA107; Name=NBRI_gA107; organism=Gossypium herbaceum; type=genetic_marker; length=217bp
CTTGGGTGAATTGTAGAACCATTGTGTGTGTGTGTGTGTGTTGTGTGTGT
GTGTGATATGTTTGTAACATATTGAAAAAGTATGCAATAATGATAAATAA
AAATGAAGGTTTCATGAAAATGGTATGCAATGAGTACGTGATACGTGAAC
TTATGTATATTGATGTTATGATTGCCCTATTAAATGCTTAAAGGTAGGGT
TACGAGTATAGTTGGCA