NBRI_e0164, NBRI_e0164 (genetic_marker) Gossypium herbaceum

Marker Overview
NameNBRI_e0164
Genbank IDHQ524936
TypeSSR
SpeciesGossypium herbaceum
GermplasmVagad
Source TypeEST
Repeat Motif(A)10
PCR ConditionAnnealing temperature: 56
Primer 1NBRI_e0164_F: TGTTGTACACATCAATGATCCA
Primer 2NBRI_e0164_R: AGAACCTCGCTGCTGTGACT
Product Length231
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankHQ524936
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D02chromosomeD02:64733166..64733389 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A03chromosomeA03:101123173..101123401 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018204.1chromosomeCM018204.1:99097211..99097439 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018216.1chromosomeCM018216.1:61047063..61047285 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:128276674..128276902 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_03chromosomeD10_03:5776213..5776436 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016616.1chromosomeCM016616.1:8533388..8533612 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr5chromosomeDt_chr5:14289233..14289456 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr5chromosomeAt_chr5:47947996..47948224 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D02chromosomeD02:61928824..61929047 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A03chromosomeA03:93455518..93455746 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D02chromosomeGhir_D02:63733176..63733399 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A03chromosomeGhir_A03:105788602..105788830 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D02chromosomeD02:63926159..63926382 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:104714869..104715097 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:102865495..102865723 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D02chromosomeD02:62201527..62201750 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A03chromosomeA03:98129456..98129684 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At03chromosomeAt03:95146205..95146433 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold4281supercontigscaffold4281:229685..229913 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold4281supercontigscaffold4281:220774..221002 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold4281supercontigscaffold4281:206440..206662 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold12681supercontigscaffold12681:184554..184782 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D02chromosomeGbar_D02:61616526..61616748 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A03chromosomeGbar_A03:98274029..98274257 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D02chromosomeD02:62981419..62981642 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A03chromosomeA03:100639136..100639364 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017624.1chromosomeCM017624.1:63971500..63971722 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017650.1chromosomeCM017650.1:65605514..65605736 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017638.1chromosomeCM017638.1:107041505..107041733 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017702.1chromosomeCM017702.1:62530179..62530401 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017690.1chromosomeCM017690.1:101037872..101038100 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D02chromosomeD02:66079596..66079819 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A03chromosomeA03:106469775..106470003 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:7217866..7218094 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr03chromosomeChr03:7145298..7145526 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_03chromosomeB_03:7290636..7290863 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr05chromosomeChr05:60189072..60189296 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr05chromosomechr05:45288714..45288938 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_05chromosomeChr_05:39133513..39133737 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr05chromosomeChr05:61821139..61821368 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr05chromosomeChr05:39556739..39556964 -Gossypium aridum (D4) genome ISU_v1n/a
Chr05chromosomeChr05:33517915..33518138 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr05chromosomeChr05:41153064..41153391 -Gossypium lobatum (D7) genome ISU_v1n/a
F03chromosomeF03:103936204..103936427 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr03chromosomeChr03:10185050..10185273 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Vagadaccession
Sequence
>NBRI_e0164 ID=NBRI_e0164; Name=NBRI_e0164; organism=Gossypium herbaceum; type=genetic_marker; length=231bp
TGTTGTACACATCAATGATCCATTCAAAGAAAAAAAAAACAAAATGAAAT
GAAATGGGAACAAAAATCATAATGAATCATTAGTAACAAAATAATAGTTA
TCATGAAACAAATGGTTAGCATATTTATGCCATAGCCAAGACTTTGTTAC
ATGATTTAATGAACAACAGAATGATAACAAATTAACAGACTTGAAAATTC
AGACTGTTCCTAGTCACAGCAGCGAGGTTCT