NBRI_e0163, NBRI_e0163 (genetic_marker) Gossypium herbaceum

Marker Overview
NameNBRI_e0163
Genbank IDHQ524935
TypeSSR
SpeciesGossypium herbaceum
GermplasmVagad
Source TypeEST
Repeat Motif(A)10
PCR ConditionAnnealing temperature: 57
Primer 1NBRI_e0163_F: AACACCCCCAACGTAAAACA
Primer 2NBRI_e0163_R: TAGGGAATCCCATGGTTCAA
Product Length196
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankHQ524935
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A07chromosomeA07:13302688..13302966 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A07chromosomeA07:13284865..13285144 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018208.1chromosomeCM018208.1:13794390..13794668 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018208.1chromosomeCM018208.1:13764624..13764903 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
tig00004541_CRI-A2_v1.0.a1chromosometig00004541_CRI-A2_v1.0.a1:57530..57811 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr9chromosomeAt_chr9:16567879..16568157 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A07chromosomeA07:12790696..12790974 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A07chromosomeGhir_A07:13853312..13853590 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A07chromosomeGhir_A07:13835505..13835784 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A07chromosomeA07:13211128..13211406 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A07chromosomeA07:13194929..13195208 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A07chromosomeA07:13806978..13807256 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A07chromosomeA07:13789155..13789434 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A07chromosomeA07:13743244..13743522 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A07chromosomeA07:13725421..13725700 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold2179supercontigscaffold2179:52945..53223 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A07chromosomeGbar_A07:13862593..13862871 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A07chromosomeA07:13613826..13614104 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A07chromosomeA07:13591975..13592254 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017616.1chromosomeCM017616.1:13528951..13529229 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017642.1chromosomeCM017642.1:13576804..13577082 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017694.1chromosomeCM017694.1:13779514..13779792 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A07chromosomeA07:13958406..13958684 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:14542849..14543129 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr07chromosomeChr07:14735346..14735628 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
F07chromosomeF07:12880432..12880721 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr07chromosomeChr07:22593088..22593375 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Vagadaccession
Sequence
>NBRI_e0163 ID=NBRI_e0163; Name=NBRI_e0163; organism=Gossypium herbaceum; type=genetic_marker; length=196bp
AACACCCCCAACGTAAAACAGCGTCACTCTGAGAGATTTTTAGTAGAGAA
AAAAAAAAGTAGGCAAGAGAAATGGCAAAATTCCCAGTGATCAACTTGGA
GAAACTGAATGGTGAGAGAGCAGCAACCATGGATCTAATCAAAGATGCCT
GCGAGAATTGGGGCTTCTTTGAGGTATTGAACCATGGGATTCCCTA