NBRI_e0022, NBRI_e0022 (genetic_marker) Gossypium herbaceum

Marker Overview
NameNBRI_e0022
Genbank IDHQ524776
TypeSSR
SpeciesGossypium herbaceum
GermplasmVagad
Source TypeEST
Repeat Motif(A)10
PCR ConditionAnnealing temperature: 57
Primer 1NBRI_e0022_F: AAAAGCCCTCTTTGGAATCG
Primer 2NBRI_e0022_R: TTTCAACTCTCCTAATTCCCCA
Product Length123
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankHQ524776
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D02chromosomeD02:60079560..60079674 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A03chromosomeA03:94312045..94312165 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018216.1chromosomeCM018216.1:56548985..56549097 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018204.1chromosomeCM018204.1:92482902..92483022 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_03chromosomeD5_03:10683654..10683768 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_03chromosomeKI_03:35912872..35912993 -Gossypioides kirkii genome ISU_v3n/a
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:120941453..120941572 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_03chromosomeD10_03:10652258..10652375 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016616.1chromosomeCM016616.1:18860217..18860337 +Gossypium australe (G2) genome CRI_v1.1n/a
At_chr5chromosomeAt_chr5:43307313..43307433 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr5chromosomeDt_chr5:20470739..20470851 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D02chromosomeD02:57254116..57254230 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A03chromosomeA03:86897395..86897515 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D02chromosomeGhir_D02:59100724..59100838 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A03chromosomeGhir_A03:98962642..98962762 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D02chromosomeD02:59500718..59500832 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:98034958..98035078 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D02chromosomeD02:60530774..60530886 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:95996498..95996618 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D02chromosomeD02:57534769..57534883 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A03chromosomeA03:91262312..91262432 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold3531supercontigscaffold3531:413486..413606 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold3531supercontigscaffold3531:415794..415906 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold1142supercontigscaffold1142:55112..55232 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D02chromosomeGbar_D02:57092720..57092832 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A03chromosomeGbar_A03:91682883..91683003 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D02chromosomeD02:58417266..58417378 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A03chromosomeA03:93897616..93897736 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017624.1chromosomeCM017624.1:59463004..59463117 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017612.1chromosomeCM017612.1:93715530..93715650 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017650.1chromosomeCM017650.1:60896854..60896967 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017702.1chromosomeCM017702.1:58010804..58010916 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017690.1chromosomeCM017690.1:94150707..94150827 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D02chromosomeD02:61458286..61458400 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A03chromosomeA03:99551907..99552027 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:14570300..14570420 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr03chromosomeChr03:14691375..14691494 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr03chromosomeChr03:52562287..52562401 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_03chromosomeB_03:13855661..13855782 +Gossypium anomalum (B1) genome NSF_v1n/a
chr05chromosomechr05:41463816..41463931 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_05chromosomeChr_05:36143971..36144085 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr05chromosomeChr05:36539802..36540031 -Gossypium aridum (D4) genome ISU_v1n/a
Chr05chromosomeChr05:30971457..30971570 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr05chromosomeChr05:37898614..37898727 -Gossypium lobatum (D7) genome ISU_v1n/a
F03chromosomeF03:97229237..97229356 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr03chromosomeChr03:26132457..26132575 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Vagadaccession
Sequence
>NBRI_e0022 ID=NBRI_e0022; Name=NBRI_e0022; organism=Gossypium herbaceum; type=genetic_marker; length=123bp
AAAAGCCCTCTTTGGAATCGAAGCAGAGAAAGAAAAAAAAAACAACNCTT
TACATTCTTTTCTCCAAAAAGGAAACGTAAAGAAAAGATTAGGAGAAATA
ATGGGGAATTAGGAGAGTTGAAA