NAU5364, NAU5364 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU5364
Genbank IDDR452564
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Xuzhou 142
Source SequenceDR452564.1
Source TypeEST
Repeat Motif(cag)6
PCR ConditionAnnealing temperature: 57
Primer 1NAU5364_F: GGCTCATCATCATCTCCTTC
Primer 2NAU5364_R: ACCATCACCAACTGGACTCT
Restriction EnzymeEcoRI; XhoI
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDR452564
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D13chromosomeD13:53277333..53277566 -
A13chromosomeA13:91668385..91668600 -
CM018227.1chromosomeCM018227.1:49262963..49263190 -
CM018214.1chromosomeCM018214.1:95838004..95838219 -
D5_13chromosomeD5_13:47859601..47859834 -
KI_13chromosomeKI_13:34923415..34923627 -
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:110120156..110120380 -
D10_13chromosomeD10_13:49990541..49990771 -
CM016626.1chromosomeCM016626.1:140102251..140102463 -
Dt_chr13chromosomeDt_chr13:20111792..20112025 +
Dt_chr7chromosomeDt_chr7:19747705..19747920 -
D13chromosomeD13:49061975..49062208 -
A13chromosomeA13:68081952..68082167 -
Ghir_D13chromosomeGhir_D13:52242835..52243068 -
Ghir_A13chromosomeGhir_A13:95413424..95413639 -
D13chromosomeD13:53381355..53381588 -
A13chromosomeA13:98059643..98059858 -
D13chromosomeD13:52408505..52408738 -
A13chromosomeA13:96259270..96259485 -
D13chromosomeD13:49334091..49334324 -
A13chromosomeA13:94402297..94402512 -
At13chromosomeAt13:73800266..73800481 -
scaffold33817supercontigscaffold33817:47085..47312 +
scaffold1585supercontigscaffold1585:89263..89478 -
Gbar_D13chromosomeGbar_D13:48937588..48937815 -
Gbar_A13chromosomeGbar_A13:96607081..96607296 -
D13chromosomeD13:50192221..50192448 -
A13chromosomeA13:100081636..100081851 -
CM017635.1chromosomeCM017635.1:49942474..49942707 -
CM017622.1chromosomeCM017622.1:97488529..97488744 -
CM017661.1chromosomeCM017661.1:53239457..53239687 -
CM017648.1chromosomeCM017648.1:102583463..102583678 -
CM017713.1chromosomeCM017713.1:50260831..50261058 -
CM017700.1chromosomeCM017700.1:97855434..97855649 -
D13chromosomeD13:53442942..53443175 -
A13chromosomeA13:98637457..98637672 -
Chr13chromosomeChr13:103445495..103445719 -
Chr13chromosomeChr13:108105722..108105946 -
Chr13chromosomeChr13:47853733..47853966 -
B_13chromosomeB_13:14899342..14899551 +
Chr13chromosomeChr13:49291434..49291667 -
chr13chromosomechr13:36152541..36152771 -
Chr_13chromosomeChr_13:34117696..34117917 -
Chr13chromosomeChr13:51803615..51803839 -
Chr13chromosomeChr13:33490615..33490845 -
Chr13chromosomeChr13:26049416..26049631 -
Chr13chromosomeChr13:32738016..32738240 -
E13chromosomeE13:99080621..99080829 -
F13chromosomeF13:83664618..83664833 -
Chr13chromosomeChr13:20622315..20622530 +
Germplasm
Stock NameType
Xuzhou 142accession
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DR452564.1DR452564.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch18_Dt.13N/A70.93NAU5364View
2JLZM x ZJXSLS, F2 (2008)A_JZ_A13N/A41.5NAU5364View
3AD-genome wide Reference Map (2009)AD_ch18_Dt.13N/A100NAU5364View
4TM-1 x Hai-7124, BC1 (2007)AD_ch18_Dt.13N/A56.2NAU5364-600View
5TM-1 x Hai-7124, BC1 (2008)AD_ch18_Dt.13N/A55.69NAU5364-600View
6TM-1 x Hai-7124, BC1 (2012)AD_ch18_Dt.13N/A64.8NAU5364-600View
7PD 94042 x (AD)4-08, F2 (2016)AD_ch18_Dt.13N/A157NAU5364View
Sequence
>NAU5364 ID=NAU5364; Name=NAU5364; organism=Gossypium hirsutum; type=genetic_marker; length=216bp
GGCTCATCATCATCTCCTTCTGGTGGACTTGCTTGTGCAATAGCTGCCCT
TGCTGAGCGTCAGCAGATGGGTGGAGAATCTTCCCTTAACCATGATGGGA
GTATGCAAGCATCTGATATGCTTCCCAGCAGCAGCAGCAGCAGGAGATTT
TATACTAATAGGTTGCACCAAGTTGGTGAGAACTATCCTCCTGCAGAGAG
TCCAGTTGGTGATGGT