NAU3918, NAU3918 (genetic_marker) Gossypium raimondii

Marker Overview
NameNAU3918
Genbank IDCO124595
TypeSSR
SpeciesGossypium raimondii
Source TypeEST
Repeat Motif(ac)6at(ac)8
PCR ConditionAnnealing temperature: 57
Primer 1NAU3918_F: TGTGAACCAGGACCCTATCT
Primer 2NAU3918_R: TCAAACGCCACAAAATTAAG
Restriction EnzymeNotI; EcoRV
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO124595
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D07chromosomeD07:8183150..8183353 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A07chromosomeA07:8870257..8870458 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018221.1chromosomeCM018221.1:7758160..7758361 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018208.1chromosomeCM018208.1:9041685..9041888 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_07chromosomeD5_07:7681511..7681722 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:9131714..9131915 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_07chromosomeD10_07:46163136..46163359 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016620.1chromosomeCM016620.1:104078652..104078857 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold120.1supercontigscaffold120.1:75146..75347 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr1chromosomeDt_chr1:39624048..39624251 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D07chromosomeD07:7713802..7714005 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A07chromosomeA07:8213231..8213432 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D07chromosomeGhir_D07:8030058..8030261 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D07chromosomeD07:7699684..7699887 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A07chromosomeA07:8683162..8683363 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D07chromosomeD07:7981362..7981565 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A07chromosomeA07:9142239..9142440 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D07chromosomeD07:7835904..7836107 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A07chromosomeA07:9197910..9198113 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold8582supercontigscaffold8582:417146..417347 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold8582supercontigscaffold8582:409758..409961 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold8582supercontigscaffold8582:409047..409250 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D07chromosomeGbar_D07:8049837..8050038 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A07chromosomeGbar_A07:8999614..8999817 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D07chromosomeD07:7891413..7891614 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A07chromosomeA07:8818407..8818610 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017629.1chromosomeCM017629.1:8180299..8180498 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017616.1chromosomeCM017616.1:8816563..8816766 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017655.1chromosomeCM017655.1:8202049..8202252 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017642.1chromosomeCM017642.1:9055227..9055428 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017707.1chromosomeCM017707.1:8016638..8016839 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017694.1chromosomeCM017694.1:8942427..8942630 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D07chromosomeD07:8114067..8114270 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A07chromosomeA07:9213020..9213221 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:9397358..9397569 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr07chromosomeChr07:9218689..9218890 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr07chromosomeChr07:45896181..45896392 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_07chromosomeB_07:9284354..9284551 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr01chromosomeChr01:7860776..7860989 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr01chromosomechr01:7217330..7217527 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr01chromosomeChr01:7829352..7829561 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr01chromosomeChr01:5487357..5487558 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr01chromosomeChr01:6780074..6780269 -Gossypium lobatum (D7) genome ISU_v1n/a
E07chromosomeE07:83354883..83355077 +Gossypium stocksii (E1) genome NSF_v1n/a
F07chromosomeF07:8267877..8268080 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr07chromosomeChr07:14208752..14208949 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr01chromosomeNAU3918:6..877 .
Chr01:7603930..7604801 -		n/a
scaffold469supercontigNAU3918:6..877 .
scaffold469:63250..64121 -		n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1AD-genome wide Reference Map (2009)AD_ch07_At.07N/A188nau3918View
2TM-1 x Hai-7124, BC1 (2007)AD_ch07_At.07N/A17.6NAU3918-240View
3TM-1 x Hai-7124, BC1 (2008)AD_ch07_At.07N/A74.03NAU3918-240View
4TM-1 x Hai-7124, BC1 (2012)AD_ch07_At.07N/A98.3NAU3918-240View
Sequence
>NAU3918 ID=NAU3918; Name=NAU3918; organism=Gossypium raimondii; type=genetic_marker; length=212bp
TGTGAACCAGGACCCTATCTTCAAGCAATACAGCTTGCCCCCTCATGAGT
GTGGTTACCCTGGTAGCATTTTCAACCCCCTCAACTTTGCCCCGACACTT
GAAGCCAAGGAAAAGGAGCTTGCCAATGGTATGCATACACACACACACAT
ACACACACACACACACGTATGATGTTCATGTAAAGAATGTGGCTTAATTT
TGTGGCGTTTGA