NAU3737, NAU3737 (genetic_marker) Gossypium raimondii

Marker Overview
NameNAU3737
Genbank IDCO118168
TypeSSR
SpeciesGossypium raimondii
Source TypeEST
Repeat Motif(tta)5
PCR ConditionAnnealing temperature: 57
Primer 1NAU3737_F: GGATAGCAGCAGGGTTAAAA
Primer 2NAU3737_R: TTCCTAGAGAAGCGAAAGGA
Restriction EnzymeNotI; EcoRV
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO118168
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D05chromosomeD05:3117184..3117573 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A05chromosomeA05:3479448..3479852 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018219.1chromosomeCM018219.1:2906530..2906919 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018206.1chromosomeCM018206.1:3439667..3440047 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:2739980..2740369 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_05chromosomeKI_05:2488696..2489095 -Gossypioides kirkii genome ISU_v3n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:3349916..3350308 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016626.1chromosomeCM016626.1:4732590..4732985 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr9chromosomeDt_chr9:66433714..66434103 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:2957647..2958036 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A05chromosomeA05:2985552..2985959 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:3092002..3092393 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A05chromosomeGhir_A05:3479804..3480211 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:2893642..2894031 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:3360599..3361006 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:3002078..3002467 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:3454055..3454462 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:2862292..2862681 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A05chromosomeA05:3858349..3858756 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold8688supercontigscaffold8688:117002..117391 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold8688supercontigscaffold8688:121741..122121 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold6720supercontigscaffold6720:203324..203713 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D05chromosomeGbar_D05:2986951..2987340 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A05chromosomeGbar_A05:3129179..3129559 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:3146637..3147026 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A05chromosomeA05:3610512..3610892 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:2973287..2973676 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017614.1chromosomeCM017614.1:3441379..3441759 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:3147747..3148133 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017640.1chromosomeCM017640.1:3496191..3496598 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:2967904..2968293 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017692.1chromosomeCM017692.1:3412252..3412644 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:3026538..3026927 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A05chromosomeA05:3563166..3563573 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:3635919..3636311 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:3206453..3206845 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr05chromosomeChr05:2745525..2745914 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_05chromosomeB_05:82843256..82843642 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr09chromosomeChr09:2872635..2873024 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_09chromosomeChr_09:3020935..3021324 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr09chromosomeChr09:2952774..2953162 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomeChr09:2731476..2731865 -Gossypium aridum (D4) genome ISU_v1n/a
Chr09chromosomeChr09:2181252..2181632 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr09chromosomeChr09:2697900..2698286 -Gossypium lobatum (D7) genome ISU_v1n/a
E05chromosomeE05:3715552..3715952 -Gossypium stocksii (E1) genome NSF_v1n/a
F05chromosomeF05:2907616..2907999 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr13chromosomeChr13:195317273..195317650 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr09chromosomeNAU3737:1..661 .
Chr09:2719676..2720595 -		n/a
Chr9chromosomeNAU3737:1..661 .
Chr9:3902155..3903074 +		n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch05_At.05N/A13.4NAU3737View
2AD-genome wide Reference Map (2009)AD_ch05_At.05N/A14NAU3737View
3Emian-22 x 3-79, BC1 (2015)AD_ch05_At.05N/A11NAU3737View
4TM-1 x Hai-7124, BC1 (2007)AD_ch05_At.05N/A24.4NAU3737-1030View
5TM-1 x Hai-7124, BC1 (2008)AD_ch05_At.05N/A19.93NAU3737-1050View
6TM-1 x Hai-7124, BC1 (2012)AD_ch05_At.05N/A189.6NAU3737-1050View
Sequence
>NAU3737 ID=NAU3737; Name=NAU3737; organism=Gossypium raimondii; type=genetic_marker; length=240bp
GGATAGCAGCAGGGTTAAAAAAAGCCTCAAAAAGGAAAACCTCAAACTTG
GCTTACATTACAATTGGGATCTTTATTATTATTATTATAATTATTATTTT
GGCTCAGCAAATTACTATGGGGATTGAGCAGCCAAACCGAGCCATGACTT
GTTGTCCCCGGACAGGGAAGGAGCTGCAGCGGAGTGACTTATCTGGGATG
GCGCTTTTGCGGGGATCCTATCCTTTCGCTTCTCTAGGAA