NAU3713, NAU3713 (genetic_marker) Gossypium raimondii

Marker Overview
NameNAU3713
Genbank IDCO117159
TypeSSR
SpeciesGossypium raimondii
Source TypeEST
Repeat Motif(gat)8
PCR ConditionAnnealing temperature: 57
Primer 1NAU3713_F: GTTTGACTGCCAATCTCAAA
Primer 2NAU3713_R: AGTGCGGTTGAGGTAAAATC
Restriction EnzymeNotI; EcoRV
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO117159
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D12chromosomeD12:56564671..56564816 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A12chromosomeA12:95525411..95525570 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018226.1chromosomeCM018226.1:53169424..53169570 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018213.1chromosomeCM018213.1:93137796..93137938 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_12chromosomeD5_12:6599971..6600120 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_12chromosomeKI_12:5309407..5309568 -Gossypioides kirkii genome ISU_v3n/a
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:7387722..7387904 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_12chromosomeD10_12:48225197..48225358 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016625.1chromosomeCM016625.1:9468677..9468820 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr8chromosomeDt_chr8:56416770..56416915 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr8chromosomeDt_chr8:50160569..50160731 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D12chromosomeD12:53058453..53058598 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A12chromosomeA12:80942550..80942712 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:55468167..55468310 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A12chromosomeGhir_A12:100164118..100164280 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D12chromosomeD12:54781212..54781357 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A12chromosomeA12:100490566..100490728 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:55575876..55576021 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A12chromosomeA12:98316160..98316322 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:53758899..53759044 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A12chromosomeA12:95236796..95236958 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At12chromosomeAt12:87035565..87035707 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold12791supercontigscaffold12791:252299..252441 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold8626supercontigscaffold8626:33030..33176 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D12chromosomeGbar_D12:52180082..52180228 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A12chromosomeGbar_A12:95149211..95149353 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D12chromosomeD12:53972128..53972274 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A12chromosomeA12:94389921..94390063 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017621.1chromosomeCM017621.1:95485867..95486046 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017660.1chromosomeCM017660.1:56723456..56723601 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017647.1chromosomeCM017647.1:99207481..99207651 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017712.1chromosomeCM017712.1:54487281..54487428 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017699.1chromosomeCM017699.1:94738908..94739051 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D12chromosomeD12:55912874..55913019 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A12chromosomeA12:101843841..101844003 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:102935166..102935327 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr12chromosomeChr12:109901162..109901347 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr12chromosomeChr12:51178333..51178482 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_12chromosomeB_12:81166479..81166646 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr08chromosomeChr08:51492407..51492578 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr08chromosomechr08:39735151..39735683 +Gossypium armourianum (D2-1) genome ISU_v1n/a
chr08chromosomechr08:39734903..39735398 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_08chromosomeChr_08:37844565..37844769 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr08chromosomeChr08:53083988..53084162 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr08chromosomeChr08:36615358..36615564 +Gossypium aridum (D4) genome ISU_v1n/a
Chr08chromosomeChr08:28746421..28746573 +Gossypium gossypioides (D6) genome ISU_v1n/a
F12chromosomeF12:84856521..84856664 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr12chromosomeChr12:163123954..163124099 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr08chromosomeNAU3713:16..778 .
Chr08:50589229..50589991 +		n/a
Chr8chromosomeNAU3713:16..778 .
Chr8:13338985..13339747 -		n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch12_At.12N/A147.29NAU3713bView
2Emian-22 x 3-79, BC1 (2011)AD_ch26_Dt.12N/A80.32NAU3713aView
3AD-genome wide Reference Map (2009)AD_ch12_At.12N/A60nau3713View
4TM-1 x Hai-1, F2 (2007 Gl2)AD_ch12_At.12N/A80.91nau3713View
5CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch12_At.12N/A110.9nau3713View
6SG 747 x Giza 75, BIL (2013)AD_ch12_At.12N/A72.9nau3713View
7TM-1 x Hai-7124, BC1 (2007)AD_ch12_At.12N/A73.6NAU3713-200View
8TM-1 x Hai-7124, BC1 (2008)AD_ch12_At.12N/A110.35NAU3713-200View
9TM-1 x Hai-7124, BC1 (2012)AD_ch12_At.12N/A109.6NAU3713-200View
Sequence
>NAU3713 ID=NAU3713; Name=NAU3713; organism=Gossypium raimondii; type=genetic_marker; length=150bp
GTTTGACTGCCAATCTCAAATTACCTAAAACTATGGCCAAAAAGATTTTT
TTTTTTAAAGTGATACATATGGTCTCAAAGGGATGATGATGATGATGATG
ATGATCAAAACTCTTCCAACAGTCCCGTCTGATTTTACCTCAACCGCACT