NAU3640, NAU3640 (genetic_marker) Gossypium raimondii

Marker Overview
NameNAU3640
Genbank IDCO114806
TypeSSR
SpeciesGossypium raimondii
Source TypeEST
Repeat Motif(ctc)5
PCR ConditionAnnealing temperature: 57
Primer 1NAU3640_F: AATGCTTGTGTCGTGAATTG
Primer 2NAU3640_R: CATGGATTGTGAAGAACCAA
Restriction EnzymeNotI; EcoRV
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO114806
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D13chromosomeD13:61076488..61076682 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A13chromosomeA13:100796002..100796193 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018227.1chromosomeCM018227.1:56734196..56734390 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_13chromosomeD5_13:55803819..55804013 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_13chromosomeKI_13:40433000..40433200 -Gossypioides kirkii genome ISU_v3n/a
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:120209016..120209207 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_13chromosomeD10_13:57797578..57797765 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016626.1chromosomeCM016626.1:155546476..155546679 -Gossypium australe (G2) genome CRI_v1.1n/a
D13chromosomeD13:56938511..56938705 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A13chromosomeA13:76776451..76776642 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D13chromosomeGhir_D13:60049854..60050048 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A13chromosomeGhir_A13:104592336..104592527 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
scaffold126-2_subseq_1_122959_obj_A13supercontigscaffold126-2_subseq_1_122959_obj_A13:26608..26799 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:60961637..60961831 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:60222526..60222720 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A13chromosomeA13:105070392..105070583 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:56871077..56871271 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A13chromosomeA13:103533327..103533518 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt13chromosomeDt13:58987716..58987910 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold2890supercontigscaffold2890:439323..439517 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold27505supercontigscaffold27505:1225..1416 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D13chromosomeGbar_D13:56533737..56533931 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A13chromosomeGbar_A13:105430094..105430285 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D13chromosomeD13:57656965..57657159 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A13chromosomeA13:108946712..108946903 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017635.1chromosomeCM017635.1:57628886..57629080 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017622.1chromosomeCM017622.1:106654160..106654351 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017661.1chromosomeCM017661.1:60842660..60842854 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017648.1chromosomeCM017648.1:111841022..111841213 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017713.1chromosomeCM017713.1:57357557..57357751 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D13chromosomeD13:61356628..61356822 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A13chromosomeA13:107825002..107825193 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:113852868..113853059 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr13chromosomeChr13:118549487..118549678 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr13chromosomeChr13:55783158..55783352 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_13chromosomeB_13:5186768..5186956 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr13chromosomeChr13:56929843..56930037 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr13chromosomechr13:42275495..42275682 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_13chromosomeChr_13:40956004..40956191 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr13chromosomeChr13:39876770..39876931 -Gossypium aridum (D4) genome ISU_v1n/a
Chr13chromosomeChr13:30841811..30842005 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr13_3557555chromosomeChr13_3557555:1612..1773 +Gossypium lobatum (D7) genome ISU_v1n/a
E13chromosomeE13:110518704..110518892 -Gossypium stocksii (E1) genome NSF_v1n/a
F13chromosomeF13:92266769..92266969 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr13chromosomeChr13:3123444..3123644 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr13chromosomeNAU3640:11..657 .
Chr13:55346697..55347343 -		n/a
Chr13chromosomeNAU3640:11..657 .
Chr13:5768668..5769314 +		n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1MGG-293-793, MAGIC (2018)AD_ch24_Dt.08N/A175.9HAU3640View
Sequence
>NAU3640 ID=NAU3640; Name=NAU3640; organism=Gossypium raimondii; type=genetic_marker; length=195bp
AATGCTTGTGTCGTGAATTGGTGGGCACGATCTAGTTCGCCTTGTGTTGC
GTACAAGGCGGCAAGATTTGCGTAAAGTGTTCCACATGCTTCTTCTGGCT
TAAGAAACATGAATTCCTGCATGCCCTCGGGGGAAGGGTTCTTGGCAGCT
GTTGCTGCTCCTCCTCCTCCTCCGTTTGGTTCTTCACAATCCATG