NAU3601, NAU3601 (genetic_marker) Gossypium raimondii

Marker Overview
NameNAU3601
Genbank IDCO113130
TypeSSR
SpeciesGossypium raimondii
Source TypeEST
Repeat Motif(at)9
PCR ConditionAnnealing temperature: 57
Primer 1NAU3601_F: AATGATGCTACCACGCTCTT
Primer 2NAU3601_R: ACAATCCCAAATCTGTTGCT
Restriction EnzymeNotI; EcoRV
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO113130
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018222.1chromosomeCM018222.1:62062475..62062712 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_08chromosomeD5_08:58209760..58210002 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
CM016621.1chromosomeCM016621.1:4769100..4769343 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt08chromosomeDt08:64898352..64898589 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold9629supercontigscaffold9629:28773..29010 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D08chromosomeGbar_D08:62177479..62177716 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D08chromosomeD08:63997585..63997822 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017630.1chromosomeCM017630.1:63809047..63809284 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017656.1chromosomeCM017656.1:65919018..65919259 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017708.1chromosomeCM017708.1:62452247..62452484 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
Chr08chromosomeChr08:59129416..59129658 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr04chromosomeChr04:40171166..40171410 -Gossypium aridum (D4) genome ISU_v1n/a
Chr04chromosomeChr04:41318266..41318513 -Gossypium lobatum (D7) genome ISU_v1n/a
Chr08chromosomeChr08:5394040..5394288 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr04chromosomeNAU3601:1..679 .
Chr04:58689406..58690084 -		n/a
Chr4chromosomeNAU3601:1..679 .
Chr4:3089248..3089925 -		n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1AD-genome wide Reference Map (2009)AD_ch06_At.06N/A235nau3601View
2TM-1 x Hai-7124, BC1 (2007)AD_ch06_At.06N/A155.2NAU3601-600View
3TM-1 x Hai-7124, BC1 (2008)AD_ch06_At.06N/A1.04NAU3601-600View
4TM-1 x Hai-7124, BC1 (2012)AD_ch06_At.06N/A13.9NAU3601-600View
Sequence
>NAU3601 ID=NAU3601; Name=NAU3601; organism=Gossypium raimondii; type=genetic_marker; length=245bp
AATGATGCTACCACGCTCTTAAGAAATAAATGAAAACAGCTTAATGGAAC
ATTTCCAGGCTTCTTTTTTTTGATAATCTATACATATATATAAACATTAT
ATATACTGGAGTTGATGATTTTTTTTTCTTTACAGTATAAAATTAAAAAA
ATCATAATCTGTTGTTCCCCATATATATATATATATATGTAATAGCTGAA
TTAAAATCTTTTCAAAAAAATTTCAAGCAACAGATTTGGGATTGT