NAU3317, NAU3317 (genetic_marker) Gossypium raimondii

Marker Overview
NameNAU3317
Genbank IDCO101485
TypeSSR
SpeciesGossypium raimondii
Source TypeEST
Repeat Motif(aat)6
PCR ConditionAnnealing temperature: 57
Primer 1NAU3317_F: AGCCATAATGCCTGAACATT
Primer 2NAU3317_R: CTCACTTTTGCCACATTTTG
Restriction EnzymeNotI; EcoRV
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO101485
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D11chromosomeD11:5354369..5354615 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018225.1chromosomeCM018225.1:4902190..4902436 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_11chromosomeD5_11:61065785..61065994 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Dt_chr7chromosomeDt_chr7:3360311..3360557 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D11chromosomeD11:5374647..5374893 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:5171685..5171931 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D11chromosomeD11:5108213..5108459 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:5224004..5224250 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:5123415..5123661 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D11chromosomeGbar_D11:4988516..4988762 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D11chromosomeD11:5009200..5009446 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017633.1chromosomeCM017633.1:4941318..4941564 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017659.1chromosomeCM017659.1:5162891..5163137 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017711.1chromosomeCM017711.1:5000875..5001121 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D11chromosomeD11:5267498..5267744 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:58548556..58548765 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr07chromosomeChr07:4789647..4789898 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr07chromosomeChr07:5046869..5047121 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr07chromosomeChr07:3989710..3989959 -Gossypium aridum (D4) genome ISU_v1n/a
Chr07chromosomeChr07:4238017..4238271 -Gossypium lobatum (D7) genome ISU_v1n/a
Chr07chromosomeNAU3317:1..755 .
Chr07:4649296..4650328 -		n/a
Chr7chromosomeNAU3317:1..755 .
Chr7:50749580..50750612 +		n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch11_At.11N/A193.06NAU3317View
2AD-genome wide Reference Map (2009)AD_ch11_At.11N/A247NAU3317View
3Emian-22 x 3-79, BC1 (2015)AD_ch11_At.11N/A42.6NAU3317View
4SG 747 x Giza 75, BIL (2013)AD_ch11_At.11N/A72.9NAU3317View
5TM-1 x Hai-7124, BC1 (2008)AD_ch11_At.11N/A135.15NAU3317-225View
6TM-1 x Hai-7124, BC1 (2007)AD_ch11_At.11N/A133.1NAU3317-225View
7TM-1 x Hai-7124, BC1 (2012)AD_ch11_At.11N/A32.4NAU3317-225View
Sequence
>NAU3317 ID=NAU3317; Name=NAU3317; organism=Gossypium raimondii; type=genetic_marker; length=210bp
AGCCATAATGCCTGAACATTATTTTCCATTGAAGAACTCACAGTATGATA
TTACAGGAAAACTTGGAAACGCCAAGCTCAGAGTTTAAAGGAATAAAATA
AAATAAATAATAATAATAATAATAAACTAAAGGCCTACATGATACAAGCC
TACAAAGGCTATAACATAGAGAACTAATCCCCAAAAATTGCAAAATGTGG
CAAAAGTGAG