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Marker Overview
| Name | NAU3214 |
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| Genbank ID | CO097408 |
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| Type | SSR |
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| Species | Gossypium raimondii |
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| Source Type | EST |
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| Repeat Motif | (ctt)6 |
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| PCR Condition | Annealing temperature: 57 |
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| Primer 1 | NAU3214_F: CGAACATCACAAATCACACA |
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| Primer 2 | NAU3214_R: CTTCAATTTGCCCCAAAAC |
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| Restriction Enzyme | NotI; EcoRV |
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| Publication | [view all] |
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| Contact | Zhang, Tian-Zhen
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| Comment | Primer data obtained in 2007-05 |
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Cross References
External references for this genetic_marker
Alignments
The following features are aligned
Publications
| Year | Publication |
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| 2007 | Guo W, Cai C, Wang C, Han Z, Song X, Wang K, Niu X, Wang C, Lu K, Shi B. A microsatellite-based, gene-rich linkage map reveals genome structure, function and evolution in Gossypium. Genetics. 2007; 176(1):527-541. |
Map Positions
| # | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
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| 1 | Emian-22 x 3-79, BC1 (2011) | AD_ch14_Dt.02 | N/A | 15.43 | NAU3214 | View |
| 2 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch14_Dt.02 | N/A | 91.37 | NAU3214 | View |
| 3 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch23_Dt.09 | N/A | 6.3 | NAU3214 | View |
| 4 | Guazuncho-2 x VH8-4602, RIL (2009) | AD_ch14_Dt.02 | N/A | 76.05 | NAU3214 | View |
| 5 | Guazuncho-2 x VH8-4602, RIL (2009) | AD_ch23_Dt.09 | N/A | 3.55 | NAU3214 | View |
| 6 | AD-genome wide Reference Map (2009) | AD_ch14_Dt.02 | N/A | 202 | NAU3214 | View |
| 7 | SG 747 x Giza 75, BIL (2013) | AD_ch14_Dt.02 | N/A | 9.7 | NAU3214 | View |
| 8 | Emian-22 x 3-79, BC1 (2012) | AD_ch14_Dt.02 | N/A | 24.2 | NAU3214 | View |
| 9 | TM-1 x Hai-7124, BC1 (2007) | AD_ch14_Dt.02 | N/A | 30.4 | NAU3214-300 | View |
| 10 | TM-1 x Hai-7124, BC1 (2008) | AD_ch14_Dt.02 | N/A | 31.32 | NAU3214-300 | View |
| 11 | TM-1 x Hai-7124, BC1 (2012) | AD_ch14_Dt.02 | N/A | 81.2 | NAU3214-300 | View |
Sequence
>NAU3214 ID=NAU3214; Name=NAU3214; organism=Gossypium raimondii; type=genetic_marker; length=249bp
CGAACATCACAAATCACACACATATCGGCCGTTGACCGAATCAACGAGCA
AATAATTCAAAAAAGAAAAGAAAACAACACGATACACTTTGAAAAAGACT
CTTCTATAATCTAAATCCAAAAGAGAGAATAGAAAATGTTCAAGATTCTA
GCAAAATTCTTAATTCTATTTCTCTCACTTAGCTTCTACAAGGTAATTAT
GCCCTTCTTCTTCTTCTTCTTTTGTGCAGTGTTTTGGGGCAAATTGAAG
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