NAU2968, NAU2968 (genetic_marker) Gossypium raimondii

Marker Overview
NameNAU2968
Genbank IDCO086701
TypeSSR
SpeciesGossypium raimondii
Source TypeEST
Repeat Motif(tg)7
PCR ConditionAnnealing temperature: 57
Primer 1NAU2968_F: CCCATTTCGTTCTTATCGTT
Primer 2NAU2968_R: CCATTACAGTCACCTGCATC
Restriction EnzymeNotI; EcoRV
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO086701
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D06chromosomeD06:59964761..59965006 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018220.1chromosomeCM018220.1:54740287..54740536 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_06chromosomeD5_06:52923325..52923568 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:120690966..120691223 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
Dt_chr10chromosomeDt_chr10:45460037..45460282 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D06chromosomeD06:56308719..56308964 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D06chromosomeD06:57485191..57485436 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:57627889..57628134 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:54901499..54901744 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold20474supercontigscaffold20474:13620..13869 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold20474supercontigscaffold20474:12485..12734 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D06chromosomeGbar_D06:54920700..54920949 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D06chromosomeD06:55096957..55097206 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017628.1chromosomeCM017628.1:55420838..55421080 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017615.1chromosomeCM017615.1:112635982..112636237 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017654.1chromosomeCM017654.1:58418402..58418645 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017641.1chromosomeCM017641.1:117661135..117661393 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017706.1chromosomeCM017706.1:55444812..55445057 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:58392367..58392612 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:118302208..118302465 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr06chromosomeChr06:120328047..120328304 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr06chromosomeChr06:52677980..52678225 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_06chromosomeB_06:15684231..15684494 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr10chromosomeChr10:54907862..54908109 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr10chromosomechr10:42538779..42539021 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr10chromosomeChr10:56676698..56676942 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr10chromosomeChr10:36128871..36129211 -Gossypium aridum (D4) genome ISU_v1n/a
Chr10chromosomeChr10:36769310..36769756 -Gossypium lobatum (D7) genome ISU_v1n/a
E06chromosomeE06:12623265..12623524 +Gossypium stocksii (E1) genome NSF_v1n/a
F06chromosomeF06:91039638..91039905 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr06chromosomeChr06:16345463..16345725 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1AD-genome wide Reference Map (2009)AD_ch06_At.06N/A166NAU2968View
2Emian-22 x 3-79, BC1 (2011)AD_ch06_At.06N/A103.73NAU2968View
3GX1135 x VGX100-2, RIL (2016)AD_ch25_Dt.06N/A45.9NAU2968View
4SG 747 x Giza 75, BIL (2013)AD_ch06_At.06N/A70.6NAU2968View
5TM-1 x Hai-7124, BC1 (2007)AD_ch06_At.06N/A104NAU2968-250View
6TM-1 x Hai-7124, BC1 (2008)AD_ch06_At.06N/A52.88NAU2968-250View
7TM-1 x Hai-7124, BC1 (2012)AD_ch06_At.06N/A52NAU2968-250View
Sequence
>NAU2968 ID=NAU2968; Name=NAU2968; organism=Gossypium raimondii; type=genetic_marker; length=247bp
CCCATTTCGTTCTTATCGTTGTTTTTTTTTTTTTGTGATCTTTTTGATCG
TTCTTGATTCTTCCATTCCAGAACCCGAATCTTGTTGTACTTTCCTATTT
TTTTCCCTTGTCTGTTTTGTTTGCTAATGATGATATATGGAATTATTTAC
TTTCTCTGTCTATCTGACTTCCATCATTCACAAGATACATAATAATTTAT
AACTTTACATGTGTGTGTGTGTGTACGGATGCAGGTGACTGTAATGG