NAU2838, NAU2838 (genetic_marker) Gossypium raimondii

Marker Overview
NameNAU2838
Genbank IDCO081874
TypeSSR
SpeciesGossypium raimondii
Source TypeEST
Repeat Motif(ctg)8
PCR ConditionAnnealing temperature: 57
Primer 1NAU2838_F: GACTGCCTAAACTGTTGCTG
Primer 2NAU2838_R: TGAACACACCATCTCCTCAG
Restriction EnzymeNotI; EcoRV
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO081874
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A06chromosomeA06:70200317..70200491 +
CM018220.1chromosomeCM018220.1:36057332..36057479 +
CM018207.1chromosomeCM018207.1:67788838..67789000 -
CM018202.1chromosomeCM018202.1:112098668..112098812 -
D5_06chromosomeD5_06:34554672..34554822 +
KI_06chromosomeKI_06:58163113..58163251 +
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:74858232..74858385 +
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:98402214..98402358 -
D10_06chromosomeD10_06:26592856..26593000 -
CM016619.1chromosomeCM016619.1:70191856..70192000 -
At_chr9chromosomeAt_chr9:41482840..41482984 -
At_chr10chromosomeAt_chr10:17646630..17646804 -
A06chromosomeA06:59979916..59980090 +
A01chromosomeA01:99001525..99001669 -
Ghir_D06chromosomeGhir_D06:39094288..39094414 +
Ghir_A06chromosomeGhir_A06:47634848..47635019 +
Ghir_A01chromosomeGhir_A01:116749032..116749176 -
A06chromosomeA06:46873540..46873714 +
A01chromosomeA01:117089162..117089306 -
A06chromosomeA06:46858360..46858534 +
A01chromosomeA01:115008509..115008653 -
A06chromosomeA06:46736671..46736845 +
A01chromosomeA01:111598280..111598424 -
Dt06chromosomeDt06:36218924..36219071 +
At01chromosomeAt01:82745767..82745911 -
scaffold2876supercontigscaffold2876:260499..260646 +
scaffold31033supercontigscaffold31033:27151..27295 -
Gbar_A06chromosomeGbar_A06:67297989..67298151 +
Gbar_D06chromosomeGbar_D06:35895771..35895918 -
Gbar_A01chromosomeGbar_A01:114623984..114624128 -
D06chromosomeD06:36444670..36444817 +
A06chromosomeA06:44619023..44619167 -
A01chromosomeA01:114622969..114623113 -
CM017628.1chromosomeCM017628.1:36970306..36970453 +
CM017610.1chromosomeCM017610.1:113140542..113140686 -
CM017654.1chromosomeCM017654.1:38056433..38056580 +
CM017641.1chromosomeCM017641.1:73757663..73757810 +
CM017636.1chromosomeCM017636.1:120694798..120694942 -
CM017706.1chromosomeCM017706.1:36711644..36711791 +
CM017693.1chromosomeCM017693.1:70145266..70145437 +
CM017688.1chromosomeCM017688.1:110783589..110783733 -
A06chromosomeA06:74593073..74593247 -
A01chromosomeA01:118680442..118680586 -
Chr01chromosomeChr01:121891907..121892051 -
Chr06chromosomeChr06:75491865..75492018 +
Chr02chromosomeChr02:1016382..1016526 +
Chr06chromosomeChr06:34413158..34413308 +
B_01chromosomeB_01:97121041..97121182 +
Chr10chromosomeChr10:36624622..36624766 +
chr10chromosomechr10:28279233..28279377 +
Chr_10chromosomeChr_10:26088264..26088408 +
Chr10chromosomeChr10:37839270..37839408 +
Chr10chromosomeChr10:20601599..20601743 +
Chr10chromosomeChr10:24930764..24930908 +
E06chromosomeE06:51536766..51536922 +
F01chromosomeF01:97605932..97606070 -
Chr06chromosomeChr06:44991192..44991336 -
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1AD-genome wide Reference Map (2009)AD_ch25_Dt.06N/A145nau2838View
2Zhongmiansuo-12 x 8891, RIL (2007)AD_ch25_Dt.06N/A9.5nau2838View
3Yumian-1 x T586, RIL (2006)AD_ch25_Dt.06N/A25.5nau2838View
4CCRI-36 x G2005, RIL (2016)AD_ch25_Dt.06N/A56.79nau2838View
5TM-1 x Hai-7124, BC1 (2007)AD_ch25_Dt.06N/A91.7NAU2838-220View
6TM-1 x Hai-7124, BC1 (2008)AD_ch25_Dt.06N/A50.36NAU2838-220View
7TM-1 x Hai-7124, BC1 (2012)AD_ch25_Dt.06N/A59.8NAU2838-220View
8Yumian-1 x T586, RIL (2009)AD_ch25_Dt.06N/A25.73NAU2838/150y(C25)View
9PD 94042 x (AD)4-08, F2 (2016)AD_ch01_At.01N/A130.9NAU2838bView
10PD 94042 x (AD)4-08, F2 (2016)AD_ch06_At.06N/A155.2NAU2838aView
Sequence
>NAU2838 ID=NAU2838; Name=NAU2838; organism=Gossypium raimondii; type=genetic_marker; length=151bp
GACTGCCTAAACTGTTGCTGAGCAAGGAGTTGCTGCTGATGCTGAGGCAA
TTGCATCATTTTTTGCCTTTGCTGCTGCTGCTGCTGCTGCTGCTGGTGTT
GTTGCTGCTGCTGCAGTTGCTGCGTTTGTTGCTGAGGAGATGGTGTGTTC
A