NAU2672, NAU2672 (genetic_marker) Gossypium raimondii

Marker Overview
NameNAU2672
Genbank IDCO074728
TypeSSR
SpeciesGossypium raimondii
Source TypeEST
Repeat Motif(atg)10
PCR ConditionAnnealing temperature: 57
Primer 1NAU2672_F: GGTTCCGAAACTTTGTTGTT
Primer 2NAU2672_R: TGATGGTGGCGATGATAATA
Restriction EnzymeNotI; EcoRV
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO074728
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D12chromosomeD12:59452928..59453153 -
A12chromosomeA12:98982942..98983164 -
CM018226.1chromosomeCM018226.1:55839210..55839432 -
CM018213.1chromosomeCM018213.1:95498996..95499215 -
D5_12chromosomeD5_12:3830657..3830885 +
KI_12chromosomeKI_12:3302574..3302787 +
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:4090185..4090404 +
D10_12chromosomeD10_12:50833476..50833698 -
At_chr12chromosomeAt_chr12:51038692..51038914 +
Dt_chr8chromosomeDt_chr8:52823380..52823605 -
scaffold3404_A12supercontigscaffold3404_A12:290038..290260 +
D12chromosomeD12:56000809..56001034 -
Ghir_D12chromosomeGhir_D12:58389259..58389484 -
Ghir_A12chromosomeGhir_A12:103305627..103305849 -
D12chromosomeD12:57620491..57620716 -
A12chromosomeA12:103464654..103464876 -
D12chromosomeD12:58465745..58465970 -
A12chromosomeA12:101462823..101463045 -
D12chromosomeD12:56640341..56640566 -
A12chromosomeA12:98378881..98379103 -
scaffold6368supercontigscaffold6368:12829..13048 +
scaffold12177supercontigscaffold12177:30079..30301 +
Scaffold2535supercontigScaffold2535:57062..57281 -
Gbar_D12chromosomeGbar_D12:54923068..54923290 -
D12chromosomeD12:56760372..56760594 -
A12chromosomeA12:97555815..97556034 -
CM017634.1chromosomeCM017634.1:56643319..56643541 -
CM017621.1chromosomeCM017621.1:98706980..98707199 -
CM017660.1chromosomeCM017660.1:59579165..59579393 -
CM017647.1chromosomeCM017647.1:102498798..102499020 -
CM017712.1chromosomeCM017712.1:57248977..57249199 -
CM017699.1chromosomeCM017699.1:97924756..97924975 -
D12chromosomeD12:58870859..58871084 -
A12chromosomeA12:105024567..105024789 -
Chr12chromosomeChr12:106096685..106096904 -
Chr12chromosomeChr12:113160752..113160971 -
Chr12chromosomeChr12:53906278..53906506 -
B_12chromosomeB_12:87004601..87004826 +
Chr08chromosomeChr08:54289522..54289750 -
chr08chromosomechr08:42160122..42160341 -
Chr_08chromosomeChr_08:40114441..40114807 -
Chr08chromosomeChr08:55866292..55866508 -
Chr08chromosomeChr08:39129585..39129816 -
Chr08chromosomeChr08:30578155..30578383 -
Chr08chromosomeChr08:37497050..37497377 -
E12chromosomeE12:109616390..109616606 -
F12chromosomeF12:87581088..87581313 -
Chr12chromosomeChr12:168571824..168572040 -
Chr08chromosomeNAU2672:1..859 .
Chr08:53291562..53292976 +
Chr8chromosomeNAU2672:1..859 .
Chr8:8029932..8031346 -
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch04_At.04N/A86.26NAU2672aView
2Emian-22 x 3-79, BC1 (2011)AD_ch12_At.12N/A170.23NAU2672bView
3Emian-22 x 3-79, BC1 (2015)AD_ch12_At.12N/A49.1NAU2672bView
4AD-genome wide Reference Map (2009)AD_ch12_At.12N/A44nau2672View
5TM-1 x Hai-1, F2 (2007 Gl2)AD_ch12_At.12N/A65.93nau2672View
60-153 x sGK9708, RIL (2016)AD_ch12_At.12N/A71.8nau2672View
7CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch12_At.12N/A142.2nau2672View
8TM-1 x Hai-7124, BC1 (2007)AD_ch12_At.12N/A80.1NAU2672-230View
9TM-1 x Hai-7124, BC1 (2008)AD_ch12_At.12N/A116.75NAU2672-230View
10TM-1 x Hai-7124, BC1 (2012)AD_ch12_At.12N/A115.9NAU2672-230View
Sequence
>NAU2672 ID=NAU2672; Name=NAU2672; organism=Gossypium raimondii; type=genetic_marker; length=229bp
GGTTCCGAAACTTTGTTGTTGATGATGATGATGATGATGATGATGATGAT
GCAAGTGCTGGTTTTCAAGGGTTTTGGTACCACTTTTCCCATCGTTTTTT
TCCGGGTTAGTAGTGATAATGGAAGATAGACACTCCGAGTCAACTCGAAC
GAGCTGGTCCGGGGTGGGTTTCTGATCAGCCAGTGGAATATTTAACCGGT
CATTATTGTTATTATCATCGCCACCATCA