NAU2501, NAU2501 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2501
Genbank IDDT053631
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Xuzhou 142
Source SequenceDT053631.1
Source TypeEST
Repeat MotifAT(6)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2501_F: GGAAATCAGCTGCTCTGAAG
Primer 2NAU2501_R: AAAATAACAGCCGAAGATGG
Product Length206
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT053631
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A02chromosomeA02:46573215..46573420 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D03chromosomeD03:31473559..31473759 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018203.1chromosomeCM018203.1:44660058..44660259 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018217.1chromosomeCM018217.1:32271640..32271840 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_02chromosomeD5_02:26424075..26424275 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_2_4chromosomeKI_2_4:30970930..30971131 -Gossypioides kirkii genome ISU_v3n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:81586646..81586851 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_02chromosomeD10_02:30845054..30845255 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016615.1chromosomeCM016615.1:71581318..71581582 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr3chromosomeDt_chr3:40087553..40087754 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr3chromosomeAt_chr3:91971982..91972187 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A02chromosomeA02:43561803..43562008 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D03chromosomeD03:25730161..25730361 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A02chromosomeGhir_A02:47500985..47501190 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D03chromosomeGhir_D03:31689374..31689573 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A02chromosomeA02:45725954..45726159 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D03chromosomeD03:33361923..33362123 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A02chromosomeA02:46077945..46078150 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D03chromosomeD03:32621646..32621847 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A02chromosomeA02:45529170..45529375 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D03chromosomeD03:32039201..32039402 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt03chromosomeDt03:26984379..26984579 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold19853supercontigscaffold19853:74590..74790 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold11147supercontigscaffold11147:4082..4283 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A02chromosomeGbar_A02:45158798..45158999 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D03chromosomeGbar_D03:30684402..30684602 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A02chromosomeA02:45617647..45617848 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D03chromosomeD03:33330140..33330340 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017611.1chromosomeCM017611.1:44941553..44941754 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017625.1chromosomeCM017625.1:31673285..31673485 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017637.1chromosomeCM017637.1:48139436..48139637 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017651.1chromosomeCM017651.1:35723820..35724020 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017689.1chromosomeCM017689.1:45432516..45432717 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017703.1chromosomeCM017703.1:33128748..33128948 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A02chromosomeA02:46994476..46994681 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D03chromosomeD03:33690627..33690827 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr02chromosomeChr02:30407246..30407451 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:87490046..87490251 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr02chromosomeChr02:28506210..28506410 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr03chromosomeChr03:30090300..30090500 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr03chromosomechr03:15830726..15830926 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_03chromosomeChr_03:12862501..12862703 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr03chromosomeChr03:31841048..31841248 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr03chromosomeChr03:13210094..13210294 +Gossypium aridum (D4) genome ISU_v1n/a
Chr03chromosomeChr03:11478114..11478314 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr03chromosomeChr03:14001935..14002133 +Gossypium lobatum (D7) genome ISU_v1n/a
E02chromosomeE02:56180179..56180377 -Gossypium stocksii (E1) genome NSF_v1n/a
F02chromosomeF02:50508427..50508634 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr02chromosomeChr02:51958227..51958426 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Xuzhou 142accession
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT053631.1DT053631.1Gossypium hirsutumsequence_feature


Sequence
>NAU2501 ID=NAU2501; Name=NAU2501; organism=Gossypium hirsutum; type=genetic_marker; length=206bp
GGAAATCAGCTGCTCTGAAGTACATATAAAAAAAAACAAGACTCCTTGCA
ATCTGTATGAGAAGTCATTTAGCTAACTTCTCAATCTTGTCTCTTACATA
TATATATATAAAATAACAAATGAAGTAAAAGAGAAAGAGGATGAGCATTC
CCTTTTTTTAAAATCTCTCTTCACTCCTTTCTCTTCCCATCTTCGGCTGT
TATTTT