NAU2499, NAU2499 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2499
Genbank IDDT053587
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Xuzhou 142
Source SequenceDT053587.1
Source TypeEST
Repeat MotifATG(4)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2499_F: TTTCTTTCAGCAGCAAAATG
Primer 2NAU2499_R: GCCAATTTGAGGTTCTTGAT
Product Length171
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT053587
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D11chromosomeD11:71656247..71656417 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A11chromosomeA11:112662353..112662523 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018225.1chromosomeCM018225.1:68001242..68001412 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018212.1chromosomeCM018212.1:113028041..113028211 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_11chromosomeD5_11:1538080..1538250 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_11chromosomeKI_11:54250099..54250266 +Gossypioides kirkii genome ISU_v3n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:1974575..1974745 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_11chromosomeD10_11:66250623..66250796 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016624.1chromosomeCM016624.1:142654013..142654183 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold1088.1supercontigscaffold1088.1:111387..111557 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold272067supercontigscaffold272067:26..196 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D11chromosomeD11:64410802..64410972 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A11chromosomeA11:91595131..91595301 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:71304304..71304474 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A11chromosomeGhir_A11:121466870..121467040 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D11chromosomeD11:69789927..69790097 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:119773800..119773970 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:70892672..70892842 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:117641338..117641508 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:67616443..67616613 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A11chromosomeA11:114119132..114119302 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt11chromosomeDt11:64779639..64779809 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold869supercontigscaffold869:47005..47175 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold7329supercontigscaffold7329:295542..295712 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D11chromosomeGbar_D11:67868071..67868241 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A11chromosomeGbar_A11:111370717..111370887 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D11chromosomeD11:70731693..70731863 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A11chromosomeA11:114534623..114534793 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017633.1chromosomeCM017633.1:69294218..69294388 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017620.1chromosomeCM017620.1:118756876..118757046 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017659.1chromosomeCM017659.1:71894305..71894475 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017711.1chromosomeCM017711.1:67434766..67434936 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017698.1chromosomeCM017698.1:113358922..113359092 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D11chromosomeD11:71211471..71211641 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A11chromosomeA11:122453837..122454007 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:130735053..130735223 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:129534497..129534667 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr11chromosomeChr11:1390614..1390784 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_11chromosomeB_11:100383918..100384091 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr07chromosomeChr07:67992362..67992532 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr07chromosomechr07:48944534..48944704 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr07_5051319chromosomeChr07_5051319:5993..6166 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr07chromosomeChr07:70133654..70133827 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr07chromosomeChr07:44455521..44455691 +Gossypium aridum (D4) genome ISU_v1n/a
Chr07chromosomeChr07:36691979..36692149 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr07_6252612chromosomeChr07_6252612:160..330 +Gossypium lobatum (D7) genome ISU_v1n/a
E11chromosomeE11:115102878..115103048 +Gossypium stocksii (E1) genome NSF_v1n/a
F11chromosomeF11:98062420..98062590 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr11chromosomeChr11:2918896..2919066 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr07chromosomeNAU2499:1..543 .
Chr07:59501859..59502324 +		n/a
Chr8chromosomeNAU2499:1..543 .
Chr8:6463950..6464415 -		n/a
Germplasm
Stock NameType
Xuzhou 142accession
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT053587.1DT053587.1Gossypium hirsutumsequence_feature


Sequence
>NAU2499 ID=NAU2499; Name=NAU2499; organism=Gossypium hirsutum; type=genetic_marker; length=171bp
TTTCTTTCAGCAGCAAAATGGGCATTTGACCAATCCATTTTCATTACAAT
CATTGCATTTCTTAATGCAAAACTCATTATCTTTCTTATGATGATGATGA
TCATCATCTTTTTCTTCATAAACCTTGCGGCTGCCATTGCAACTAGTGCA
AATCAAGAACCTCAAATTGGC