NAU2472, NAU2472 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2472
Genbank IDDT052726
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Xuzhou 142
Source SequenceDT052726.1
Source TypeEST
Repeat MotifAT(7)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2472_F: CAAAGTGGGATCTAATTAACCT
Primer 2NAU2472_R: CAACGAAACCTGTAGTGACG
Product Length131
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT052726
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A10chromosomeA10:22401247..22401377 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018211.1chromosomeCM018211.1:22607554..22607680 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:33562342..33562484 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr11chromosomeAt_chr11:70835132..70835262 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A10chromosomeA10:21042395..21042525 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A10chromosomeGhir_A10:22949026..22949155 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A10chromosomeA10:22506593..22506723 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:22551115..22551243 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:23404066..23404196 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At10chromosomeAt10:22803969..22804095 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold8838supercontigscaffold8838:134600..134726 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A10chromosomeGbar_A10:22883335..22883461 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A10chromosomeA10:22725418..22725544 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017619.1chromosomeCM017619.1:22794487..22794615 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017645.1chromosomeCM017645.1:23492754..23492882 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017697.1chromosomeCM017697.1:23012690..23012820 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A10chromosomeA10:23570484..23570614 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:98011060..98011197 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:91436780..91436924 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
F10chromosomeF10:69177998..69178126 +Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Xuzhou 142accession
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT052726.1DT052726.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1AD-genome wide Reference Map (2009)AD_ch10_At.10N/A61nau2472View
2TM-1 x Hai-7124, BC1 (2007)AD_ch10_At.10N/A47.3NAU2472-150View
3TM-1 x Hai-7124, BC1 (2008)AD_ch10_At.10N/A59.14NAU2472-150View
4TM-1 x Hai-7124, BC1 (2012)AD_ch10_At.10N/A68.7NAU2472-150View
Sequence
>NAU2472 ID=NAU2472; Name=NAU2472; organism=Gossypium hirsutum; type=genetic_marker; length=131bp
CAAAGTGGGATCTAATTAACCTGACATGAAACAATACATACATACACATA
TATATATATATAATAAATAAGGCAAAAAAAGAAATGAAAAGTTAAAATTT
CATGGCGTCAACGTCACTACAGGTTTCGTTG