NAU2467, NAU2467 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2467
Genbank IDDT052644
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Xuzhou 142
Source SequenceDT052644.1
Source TypeEST
Repeat MotifAGGG(5)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2467_F: TGTTCATCAACAAACTCTCCA
Primer 2NAU2467_R: TTGCAGATCATTGATTTTGG
Product Length146
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT052644
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A12chromosomeA12:97992796..97992940 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018213.1chromosomeCM018213.1:94874700..94874844 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:4746989..4747133 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold1554.1supercontigscaffold1554.1:216840..216984 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A12chromosomeA12:83378131..83378275 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:57827862..57828003 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A12chromosomeGhir_A12:102671032..102671176 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A12chromosomeA12:102861610..102861754 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A12chromosomeA12:100828049..100828193 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A12chromosomeA12:97743499..97743643 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt12chromosomeDt12:58677127..58677268 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Dt12chromosomeDt12:58672318..58672459 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold3276supercontigscaffold3276:453774..453918 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold12891supercontigscaffold12891:40927..41068 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold12891supercontigscaffold12891:36118..36259 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D12chromosomeGbar_D12:54355959..54356100 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A12chromosomeGbar_A12:97688331..97688475 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A12chromosomeA12:96881677..96881821 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017621.1chromosomeCM017621.1:98122940..98123084 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017647.1chromosomeCM017647.1:101813848..101813992 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017699.1chromosomeCM017699.1:97277834..97277978 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A12chromosomeA12:104391935..104392079 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:105406053..105406197 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr12chromosomeChr12:112502716..112502860 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr08chromosomeChr08:55371980..55372121 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Germplasm
Stock NameType
Xuzhou 142accession
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT052644.1DT052644.1Gossypium hirsutumsequence_feature


Sequence
>NAU2467 ID=NAU2467; Name=NAU2467; organism=Gossypium hirsutum; type=genetic_marker; length=146bp
TGTTCATCAACAAACTCTCCAACTTCTTTAATTTACAAAGGGAGGGAGGG
AGGGAGGGAGCAGTACAGTAATTGATATAAACACTCCCGGCTATACATTA
ATCAAAGANCAGATATAAATAGGGATCCAAAATCAATGATCTGCAA